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Showing 11 open source projects for "paper"
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EEGLAB
EEGLAB is an open source signal processing environment
...This folder contains original Matlab functions from the EEGLAB (formerly ICA/EEG) Matlab toolbox, all released under the Gnu public license (see eeglablicence.txt). See the EEGLAB tutorial and reference paper (URLs given below) for more information. All distributed EEGLAB functions (admin, sigproc, pop, misc). -
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Eventer
Rapid, unbiased, reproducible analysis of synaptic events
...The software is coded in MATLAB, but has been compiled as standalone applications for Windows, Mac and Linux. Please visit the official Eventer website for more info https://eventerneuro.netlify.app/ While the paper is in preparation, please cite as; Winchester, G., Liu, S., Steele, O.G., Aziz, W. and Penn, A.C. (2020) Eventer. Software for the detection of spontaneous synaptic events measured by electrophysiology or imaging. http://doi.org/10.5281/zenodo.3991676 -
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123VCF
An Intuitive and Efficient Tool for VCF file filtration
...It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran -
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Newsvendor Model Simulation Spreadsheet
Excel Spreadsheet Model for Single Period Inventory Problems
...Spreadsheet modeling and applications: essentials of practical management science, South-Western Pub. Albright, S. C. W. C., Winston, W., & Zappe, C. (2010). Data analysis and decision making. Cengage Learning. Hill, A. V. (2011). The newsvendor problem. White Paper, 57-23. Lawrence, J. A., & Pasternack, B. A. (2002). Applied management science. Willey, Chichester. Microsoft. Office Dev Center (2017). Excel performance: Improving calculation per -
Stop Storing Third-Party Tokens in Your DatabaseRolling your own OAuth token storage can be a security liability. Token Vault securely stores access and refresh tokens from federated providers and handles exchange and renewal automatically. Connected accounts, refresh exchange, and privileged worker flows included.
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...hf5192 -) 3D elemental sensitive imaging using transmission X-ray microscopy, Analytical and Bioanalytical Chemistry, Volume 404, Issue 5, pp 1297-1301 (2012) http://link.springer.com/article/10.1007%2Fs00216-012-5818-9 -) Three-dimensional imaging of chemical phase transformations at the nanoscale with full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 18, 773-781. (2011) http://scripts.iucr.org/cgi-bin/paper?ie5055
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MS Data Miner
MS Data Miner - A web-based proteomics software
...This open sourced system includes a spectra validation-system and automatically screenshot generation tool for Mascot-assigned spectra. In addition, a GO term analysis function and a tool for generating comparative data-reports are included. The software is described in the following paper: Dyrlund TF, Poulsen ET, Scavenius C, Sanggaard KW, Enghild JJ. MS Data Miner: A web-based software tool to analyze, compare and share mass spectrometry protein identifications. PROTEOMICS 2012 http://www.ncbi.nlm.nih.gov/pubmed/22833312 -
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X-SOCS
X-ray Strain Orientation Calculation Software
...X-SOCS aims at retrieving strain and tilt maps of nanostructures, films, surfaces or even embedded structures. For more information: http://scripts.iucr.org/cgi-bin/paper?S1600576714004506 To download the latest version of XSOCS (D. Naudet, T. Vincent, M.I. Richard, G. Chahine), follow the instruction in the following link: https://gitlab.esrf.fr/kmap/xsocs You can find on youtube video tutorials explaining the main steps to follow for a standard KMAP data analysis. In the folder XSOCS_tutorials_data of the Files tab, you can download the dataset used in the tutorials. ... -
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QuickRNASeq
A pipeline for large scale RNA-seq data analysis
...Please take a look at our test run project report and get a taste of its rich interactive visualization features. http://baohongz.github.io/QuickRNASeq QuickRNASeq user guide can be downloaded or is accessible online as well http://baohongz.github.io/QuickRNASeq/guide.html For more on QuickRNASeq, please see our paper http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-2356-9 Enjoy QuickRNASeq -
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Lab Processes
Rediscover the Simplicity http://www.atgclabs.com/
Help us to improve Lab Processes. We want to hear your feedback! Request new Lab Processes feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/lp Lab Processes is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Lab Processes requires minimal computing skills. Genetic and physiological data can be entered either... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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vonMises
Package for dealing with the von Mises periodogram
...The package can be used to compute the periodogram itself, as well as its detection significance levels. It can also perform some Monte Carlo simulations of the periodogram. The details of the theory are given in the following refereed paper: Baluev R.V., 2013, MNRAS, V. 431, P.1167-1179. The version 1.0 uploaded here is the same package as the one that can be downloaded along with the above paper as "Supporting information". Further updates of the package may appear here in the future. See also the readme file in the downloadable archive. -
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mendelFix
Correction of SNP Mendelian errors in trio data
...Utsunomiya YT, Alonso RV, Carmo AS, Campagnari F, Visintin J, Garcia JF (2013). mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs. arXiv:1306.2243. You can find our paper at http://arxiv.org/abs/1306.2243.
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