Showing 15 open source projects for "open source project"

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  • 1
    R packages (maintained by YJLEE)

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).
    Downloads: 18 This Week
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  • 2
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 0 This Week
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  • 3
    Mass-Up

    Mass-Up

    MALDI-TOF data analysis tool

    Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data.
    Downloads: 14 This Week
    Last Update:
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  • 4

    Ship Lock Scheduling

    Scheduling lockages at ship locks with several parallel lock chambers

    This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding...
    Downloads: 0 This Week
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  • 5
    IAP.G2P

    IAP.G2P

    IAP - the Integrated Analysis Pipeline

    The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.
    Downloads: 0 This Week
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  • 6

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    ...The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.
    Downloads: 0 This Week
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  • 7
    e-Science Central

    e-Science Central

    Cloud based scientific data analysis

    e-Science Central has moved to BitBucket, please visit: https://bitbucket.org/digitalinstitute/esciencecentral/
    Downloads: 0 This Week
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  • 8
    A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
    Downloads: 0 This Week
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  • 9
    EnvStats

    EnvStats

    An R Package for Environmental Statistics

    EnvStats is an R package for environmental statistics. It is the open-source successor to the commercial module for S-Plus© called "EnvironmentalStats for S-Plus", which was first released in April, 1997. The EnvStats package, along with the R software environment, provides comprehensive and powerful software for environmental data analysis. EnvStats brings the major environmental statistical methods found in the literature and regulatory guidance documents into one statistical package, along with an extensive hypertext help system that explains what these methods do, how to use these methods, and where to find them in the environmental statistics literature. ...
    Downloads: 0 This Week
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  • 10

    RCFPD

    Random Collection of Functions for Proteomics Data Analysis

    An R package for distribution of data analysis functionality used by the Proteomics Core at Weill Cornell Medical College in Qatar.
    Downloads: 0 This Week
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  • 11

    Electrophysiology & circular stats tools

    Data analysis and circular statistics with OpenElectrophy and R

    Set of tools for basic analysis of electrophysiological data. The Python classes show how to call OpenElectrophy functions and save data. The R library applies circular statistics to spike phase data and saves the best von Mises fit and the Rayleigh statistics on the disk. The wavelet coherence analysis is done in R by the package "sowas". Check the module R_coherence to see how we solved that problem. This packages may be useful for people who start using OpenElectrophy and circular...
    Downloads: 0 This Week
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  • 12
    BigBang/Horizon is a proteomics data analysis pipeline with focus on the shotgun LC/MSMS workflow.
    Downloads: 0 This Week
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  • 13
    GNUexp
    GNUexp is a GNUstep/Cocoa framework and a collection of tools helping you to plan, develop, and administer applications associated with visual psychophysics, experimental psychology and statistical data analysis.
    Downloads: 0 This Week
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  • 14
    The Canopy project is an initiative to merge and expand the functionality of Perl-speaks-NONMEM (PsN), Census, Xpose and PopED. The goal is to produce a coherent, inclusive and convenient platform for pharmacometric data analysis.
    Downloads: 0 This Week
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  • 15
    Open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern discovery, statistics (thru R), machine-learning algorithms and visualization
    Downloads: 0 This Week
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