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Data Analysis, Simulations and Visualization on the Sphere
...Gorski et al., 2005, Ap.J., 622, p.759
Full software documentation available at https://healpix.sourceforge.io/documentation.php
Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home
Exchanging Data with HEALPix (in FITS files): https://sourceforge.net/p/healpix/wiki/Exchanging%20Data%20with%20HEALPix/
GDL and FL users should read https://sourceforge.net/p/healpix/wiki/HEALPix%20and%20GDL/
...Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving.
For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/
Quick overview video:
https://youtu.be/8rJHce7M5UU
More in-depth video using the APT school demos live script:
https://www.youtube.com/watch?v=cyrLHCzZwuw
For details of the maximum likelihood method used to solve peak overlaps see the following papers: https://doi.org/10.1017/S1431927616012782 and https://doi.org/10.1017/S1431927618016276 for the quantification of the uncertainty.
...
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification.
PRADA currently supports 7 modules to process and identify...