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Showing 18 open source projects for "run sackboy run"
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Gephi
Gephi the open graph Viz platform
...Fast Powered by a built-in OpenGL engine, Gephi is able to push the envelope with very large networks. Visualize networks up to a million elements. All actions (e.g. layout, filter, drag) run in real-time. Simple Easy to install and get started. An UI that is centered around the visualization. Like Photoshop™ for graphs. Modular Extend Gephi with plug-ins. The architecture is built on top of Apache Netbeans Platform and can be extended or reused easily through well-written APIs. -
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SageMaker Spark Container
Docker image used to run data processing workloads
...It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Structured Streaming for stream processing. The SageMaker Spark Container is a Docker image used to run batch data processing workloads on Amazon SageMaker using the Apache Spark framework. The container images in this repository are used to build the pre-built container images that are used when running Spark jobs on Amazon SageMaker using the SageMaker Python SDK. The pre-built images are available in the Amazon Elastic Container Registry (Amazon ECR), and this repository serves as a reference for those wishing to build their own customized Spark containers for use in Amazon SageMaker. -
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DuckDB
DuckDB is an in-process SQL OLAP Database Management System
...Concurrent large changes, to multiple large tables, e.g. appending rows, adding/removing/updating columns. Large result set transfer to client. For development, DuckDB requires CMake, Python3 and a C++11 compliant compiler. Run make in the root directory to compile the sources. For development, use make debug to build a non-optimized debug version. -
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Datasette
An open source multi-tool for exploring and publishing data
Datasette is a tool for exploring and publishing data. It helps people take data of any shape or size, analyze and explore it, and publish it as an interactive website and accompanying API. Datasette is aimed at data journalists, museum curators, archivists, local governments, scientists, researchers and anyone else who has data that they wish to share with the world. It is part of a wider ecosystem of tools and plugins dedicated to making working with structured data as productive as... -
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POCO
Cross-platform C++ libraries for building network applications
The POCO C++ Libraries are powerful cross-platform C++ libraries for building network- and internet-based applications that run on desktop, server, mobile, IoT, and embedded systems. Whether building automation systems, industrial automation, IoT platforms, air traffic management systems, enterprise IT application and infrastructure management, security and network analytics, automotive infotainment and telematics, financial or healthcare, C++ developers have been trusting the POCO C++ Libraries for 15+ years and deployed it in millions of devices. ... -
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Wooey
A Django app that creates automatic web UIs for Python scripts
Wooey is a simple web interface to run command line Python scripts. Think of it as an easy way to get your scripts up on the web for routine data analysis, file processing, or anything else. The project was inspired by how simply and powerfully sandman could expose users to a database and by how Gooey turns ArgumentParser-based command-line scripts into WxWidgets GUIs. -
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BDS
Blockchain data parsing and persisting results
JD Cloud Blockchain Data Service (BDS) is a real-time data aggregating, analyzing, and visualization service for chain-like unstructured data from all kinds of 3rd party Blockchains. Splitter is the key module of Blockchain Data Service (BDS) and provides data analysis capability. Splitter is responsible for consuming blockchain data from message queue (kafka) and inserting data into persistent data storage services (relational database, data warehouse, etc.) for further processing. Before... -
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postgresqltuner.pl
Simple script to analyse your PostgreSQL database configuration
postgresqltuner is a Perl script designed to analyze PostgreSQL database configurations and provide tuning advice. It assists database administrators in optimizing performance by offering recommendations based on the current setup. -
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Central Proteomics Facilities Pipeline
A data analysis pipeline for shotgun mass-spectrometry proteomics.
...However: * Limited fixes have been made on the main master branch by Phil Charles at the University of Oxford. * As of 2019, limited maintenance is being carried out by myself (now in the BioHPC high performance computing group at UTSW), to allow CPFP to install and run on RHEL 7 / CentOS 7, with updated TPP 5.1.0 and search tools. This updated code can be found in the utsw-biohpc branch of the git repository, and may become a 2.2.0 release if time and testing allows. -- David Trudgian - 2019/01/03 -
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QuickRNASeq
A pipeline for large scale RNA-seq data analysis
...We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies. Our pipeline significantly lifts large-scale RNA-seq data analysis to the next level of automation and visualization. Please take a look at our test run project report and get a taste of its rich interactive visualization features. http://baohongz.github.io/QuickRNASeq QuickRNASeq user guide can be downloaded or is accessible online as well http://baohongz.github.io/QuickRNASeq/guide.html For more on QuickRNASeq, please see our paper http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-2356-9 Enjoy QuickRNASeq -
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Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
...However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline uses state-of-the-art tools and can run on various platforms with minimal configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression. -
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Pyclamp
A Python package used to extract and analyse electrophysiological data
Pyclamp is Python package used to extract and analyse electrophysiological data. A graphical user interface has been developed to allow a user to run the pack- age without requiring any knowledge of Python code. Presently, Pyclamp is designed to perform very specific forms of analysis on evoked synaptic responses: Data analysis (under development) : This is a highly user-interactive en-vironment that can be used to discriminate synaptic events, obtain various measures of their kinetics and size, and output the results. ... -
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify... -
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SFrame is a C++ framework built around the ROOT libraries for analysing particle physics data. It gives a very high performance for processing data, by allowing the user to run his/her code on a distributed farm of machines.
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neural network designer
a dbms for neural nets. Chatbots, DTrees, random forests, n-grams,...
This project consists out of a windows based designer application and a library (that can run on multiple platforms, including android) together with several demo applications (including an MVC3 chatbot client and an android application). It is probably best compared to a database management system, but for neural networks instead of relational data. As such, the library is optimized for handling any type of data-size by using advanced streaming and caching algorithms. -
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Census is a comprehensive cross-platform project manager and integration hub for NONMEM, the gold standard tool for model-based pharmacometric data analysis.
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BGP Looking-glass
Open Source BGP Looking-glass
BigPlg allows the collection of the IPv4 Internet routing table which may be viewed by service providers and/or ISP customers to validate IP routing across autonomous systems. Routing updates may also have attributes aliased to become (graph) readable. This function exists to allow the exporting of RIB updates to Splunk, or any such data collector. A beneficial side-effect of collecting BGP routing information is the ability to track BGP updates/events local or remote(upstream). To analyze... -
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Mundo-Bioq permit to collect patient data, analysis data, and accounting of laboratory data. It's focused to small laboratories that speak spanish. It's developed in FoxPro/DOS and run in in DOS, but also can run in Linux (under DOSEMU), and any Win
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