Showing 139 open source projects for "school-software"

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  • 1

    PRADA

    PRADA : Pipeline for RNA-Sequencing Data Analysis

    Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify...
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  • 2
    EyePro v3.0 (ergo)

    EyePro v3.0 (ergo)

    Award winning eye health monitoring and Work Stress reliever

    What is EyePro? EyePro is a handy PC application that regularly reminds you to take “Short Breaks for your Eyes” with many exciting, customizable and Innovative features. It is an innovative tool done under the guidance of eminent Eye Doctors Who is Eye Pro for? Everyone who spends more than a 2 hours per day looking at a display. But especially People who spend ot of time in-front of PC, Employees with Computer related job environment, Students, Computer Professionals, will...
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  • 3

    ckon

    automatic build tool for ROOT data analysis software

    ckon is a C++ program/tool which automatically takes care of compilation, dictionary generation and linking of programs and libraries developed for data analyses within the CERN ROOT analysis framework. This includes parsing include headers to figure out which libraries the main programs need to be linked to. It uses automake/autoconf to be platform independent and GNU install compliant. In addition, m4 macros are automatically downloaded and the according compiler flags included based on a...
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  • 4

    HEIMDALL

    High-End Interface for Monitoring & spatial Data Analysis using L2Norm

    HEIMDALL, short for High-End Interface for Monitoring and spatial Data Analysis using L2-Norm, is a set of public libraries written in JAVA which contains routines and algorithms for geodetic hardware connection. To observe objects (in general spatial points) continuous, HEIMDALL’s programmable logic arrays can be used to design monitoring systems. For data analysis an interface to the least-squares program JAG3D can be provided. The serial communication with e.g. inclination sensors,...
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  • 5

    TrollEditor

    Editor of virtual worlds.

    Troll enables creation and visualisation of complex environments. It is based on Ogre3D (graphics engine), Bullet (physics engine), PhysX (physics engine), OpenAL (3D sound and music), OpenCV (image analysis and camera model) and Boost (threading and python binding). It uses Python for scripting, as well as built in simple scripting language. Some features: - built in multiplayer - incorporating data from different sensors (IMU, AHRS, Razer Hydra) - image server/client - built in...
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  • 6

    fedtool

    Tool to aid factorial design analysis of in vitro experiments.

    ...An Excel-spreadsheet tool steps the user through specifying factor names and entering the design and data from the experiment. The tool deconvolutes the data into a matrix which can be pasted into data visualisation and / or data analysis software.
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  • 7

    ThermV

    Comprehensive thermal analysis software package

    ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state.
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  • 8
    Software quality assurance is essential in genomic medicine. Nonetheless there is currently no systematic evaluation of existing computational tools used for whole genome or whole exome sequencing data analysis. We developed a Metamorphic Testing tool that tests three widely used short-read alignment programs (BWA, Bowtie and Bowtie2) in order to systematically evaluate their performance.
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  • 9
    Grid3D Toolbox

    Grid3D Toolbox

    3D grid toolbox for analysis of molecular simulations

    ...Currently, the tools only work with the simulation trajectories generated by the GROMACS simulation package (http://www.gromacs.org/). The generated density maps are saved in the Grid3D native .g3d format and can be visualized using a third party data visualization software. A converter from the .g3d format to .vti, an XML based format of the VTK library is provided with the "Grid3D Toolbox", so that the generated density maps can be visualized using the ParaView data analysis and visualization software (http://www.paraview.org). For more details read the upcoming publication in Faraday Discussions: FD169: Density based visualization for molecular simulation.
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  • 10
    neural network designer

    neural network designer

    a dbms for neural nets. Chatbots, DTrees, random forests, n-grams,...

    This project consists out of a windows based designer application and a library (that can run on multiple platforms, including android) together with several demo applications (including an MVC3 chatbot client and an android application). It is probably best compared to a database management system, but for neural networks instead of relational data. As such, the library is optimized for handling any type of data-size by using advanced streaming and caching algorithms. With the designer,...
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  • 11
    q pipeline manager

    q pipeline manager

    q: integrated platform for pipeline configuration and management

    The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently...
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  • 12

    FoodPhysicsApplication

    A C# application for scientists in the area of physical chemistry

    The project has been created to develop a software that can help scientists in the area of physical chemistry with focus on foods data analysis tools that are currently mainly done by hand. In the first step, advanced analysis of texture analyzer compression data are provided and the project will be extended over time dependent on the time I can get to continue with it.
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  • 13
    allink

    allink

    Software for data analysis, image processing, simulations, solver.

    Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the...
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  • 14
    TOPS_CeMM

    TOPS_CeMM

    User Friendly Data Analysis Tool for Interaction Data

    TOPS provides the benchtop scientist with a free toolset to analyze, filter and visualize data from functional genomic gene-gene and gene-drug interaction screens with a flexible interface to accommodate various different technologies and analysis algorithms in addition to those already provided here.
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  • 15
    jFox Journal

    jFox Journal

    Trading journal for Currency,Stock,Commodity traders

    jFox Trading Journal is software developed mainly for currency traders,it provides advanced data analysis to improve traders ability to reach higher profits and eliminate losses.jFox keeps your data in one place.To access or modify any of your data jFox provide simple user friendly GUI.By generating graphs and statistics automaticly,user only needs to provide his data to have full overview over his trades and trading performance.
    Downloads: 1 This Week
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  • 16
    EnvStats

    EnvStats

    An R Package for Environmental Statistics

    ...It is the open-source successor to the commercial module for S-Plus© called "EnvironmentalStats for S-Plus", which was first released in April, 1997. The EnvStats package, along with the R software environment, provides comprehensive and powerful software for environmental data analysis. EnvStats brings the major environmental statistical methods found in the literature and regulatory guidance documents into one statistical package, along with an extensive hypertext help system that explains what these methods do, how to use these methods, and where to find them in the environmental statistics literature. ...
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  • 17

    iAIDA

    iAIDA is a C++ implementation of the AIDA interfaces.

    iAIDA is an implementation in C++ of the AIDA Abstract Interfaces for Data Analysis, a set of interfaces designed for data analysis. Initially designed for use in experimental and theoretical physics, the AIDA interfaces can also be used in other fields.
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  • 18

    Xross Tab / QScript

    Market Research Data Processing Suite

    XTCC/Qscript revolves around two concepts: 1) Data collection : Qscript 2) Data analysis : XTCC Qscript enables Market Research companies to securely collect data using online and offline mediums such as web, tablets/mobile. Different products include: 1) Pen and Paper Survey Management Qscript enables faster and easier keyboard entry with real time logic and validation. It generates SPSS and IBM Quantum compatible data tabulation programs leading to significant time savings of up...
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  • 19

    locusvu

    Tool for genomics;automates data retrieval from db;enables workflows

    LocusVu is a novel Java based software tool that accepts a list of genomic loci (positions on the chromosome) as input and automates fetching of related information (cytogenetic band, gene name, OMIM data etc.) from public databases such as the UCSC genome browser database. It then enables multiple workflows on the retrieved results, like comparing multiple datasets (comparative genomics), viewing neighboring genes for a loci from within the tool itself, or graphically representing these results in bar / pie charts. ...
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  • 20

    mendelFix

    Correction of SNP Mendelian errors in trio data

    ...The program takes 12-recoded PLINK PED and MAP files as input, and calculates a series of summary statistics for Mendelian errors, sets as missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to infer missing genotypes using parent information. The program can be easily incorporated in any pipeline for family-based SNP data analysis, and is distributed as free software under the GNU General Public License. Utsunomiya YT, Alonso RV, Carmo AS, Campagnari F, Visintin J, Garcia JF (2013). mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs. arXiv:1306.2243. You can find our paper at http://arxiv.org/abs/1306.2243.
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  • 21
    CoDaPack
    Compositional data analysis, following the approach introduced by John Aitchison, is not straightforward to use with standard statistical packages. CoDaPack provides a software capable of using the Aitchison methodology.
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  • 22

    GXSM for Windows

    Universal STM/AFM/SARLS/SPALEED controlling and data analysis software

    Gxsm for Windows is the Windows version of the GXSM - Gnome X Scanning Microscopy, a complete open source software solution designed for Scanning Probe Microscopy-SPM techniques ( Scanning Tunneling Microscopy-STM, Scanning Force Microscopy-AFM...), but also SPA-LEED... The Windows version is up-to-date and keeps all the features as the Linux version as possible. Gxsm for Windows currently supports DSP hardware controller from Softdb such as SignalRanger SR1, SignalRanger SR2...
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  • 23

    TSDF

    Time-Series Degradation Data Format for Semiconductor Reliability Data

    ...With this separation, it is easy for a user to view or search through a set of TSDF files to get information needed to put the data in context (process, lot and wafer info, device types, failure mechanism, etc.) Based on this data format, software tools such as conversion programs, database management tools, and data analysis tools will be developed and distributed to the user community. Extensions to handle detailed device parameter information, detailed stress waveforms, and semiconductor package information are being planned.
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  • 24

    MolBioLib

    C++11 framework for rapid develop and deploy of bioinformatic tasks.

    MolBioLib is a compact, portable, and extensively tested C++11 software framework and set of applications tailored to the demands of next-generation sequencing data and applicable to many other applications. MolBioLib is designed to work with common file formats and data types used both in genomic analysis and general data analysis. A central relational-database-like Table class is a flexible and powerful object to intuitively represent and work with a wide variety of tabular datasets, ranging from alignment data to annotations. ...
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  • 25
    This is a Matlab software package for single molecule FRET data analysis.
    Downloads: 3 This Week
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