Showing 2 open source projects for "visualization"

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    Protein Contact Matrix Generator

    Command line application to generate contact matrix from proteins (3D)

    ...Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand proteins' : 1. Secondary structures 2. Conformational arrangements 3. Surface interactions
    Downloads: 0 This Week
    Last Update:
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  • 2
    IntiMap is a convenience tool to run the MS-DOS command-line tool MapPop for selective genotyping. It adds facilities to prepare genotyping data files, manage genotype sets and visualize mapping results (genetic marker maps).
    Downloads: 0 This Week
    Last Update:
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