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Protein Contact Matrix Generator

Command line application to generate contact matrix from proteins (3D)

A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps).

Downloads: 0 This Week

Last Update: 2015-06-25
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