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Showing 2 open source projects for "java programs"
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Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand... -
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KMLTool (better name wanted) is a command line tool written in java, mainly designed to automate the process of converting kismets .gpsxml/.netxml files into google earth's KML files, with some features i used to miss in other programs for this job.
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