Search Results for "perl script"
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Showing 5 open source projects for "perl script"
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Platypus
Create native Mac applications from command line scripts
Platypus is a developer tool that creates native Mac applications from command line scripts such as shell scripts or Python, Perl, Ruby, Tcl, JavaScript, and PHP programs. This is done by wrapping the script in an application bundle along with a slim app binary that runs the script. Platypus makes it easy to share scripts and programs with people who are unfamiliar with the command line interface. Native, user-friendly applications can be created with a few clicks. ... -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create). -
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TSA_CRAFT
Automatic command line tool for TSA data analysis
DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily displayed by a web browser. -
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If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
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Provides a linux/unix command line tool to "scrub" comma delimited files. Removing extra spaces, mr. dr. etc. Also removing duplicate records based on a comparison of columns/fields. It's a bash script using awk, cut, join and nl. Using a little perl
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