Search Results for "matrix structural analysis"
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Showing 2 open source projects for "matrix structural analysis"
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code-review-graph
Local-first code intelligence graph for MCP and CLI
Code Review Graph is a local-first code intelligence tool that builds a persistent structural map of a software repository. It parses source files with Tree-sitter and stores functions, classes, imports, calls, inheritance, and test relationships in a SQLite graph. When code changes, blast-radius analysis identifies the callers, dependents, and tests most likely to be affected. AI coding assistants can query this focused context through MCP instead of repeatedly scanning an entire codebase. ... -
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Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand...
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