Search Results for "data analysis and visualizing"

PDF4QT is open source PDF editor based on Qt framework. It contains a C++ library, applications for viewing/editing PDF documents, and a command line tool. PDF4QT is an open-source PDF editor for Windows/Linux. It is a modern solution for viewing/editing/rendering PDF documents, for users and developers alike. For developers, there is a C++ library and a command line tool for use in scripts. For users, there are four applications offering many features. The project is hosted on Github and...

Hypercube is a tool for visualizing DOT (graphviz), GML, GraphML, GXL and simple text-based graph representations as SVG and EPS images. Hypercube comes with a Qt based GUI application and a Qt-independent command-line tool. It uses a simulated annealing algorithm to lay out the graph, that can be easily parameterized to achieve the desired look. The main development goals are portability and easy usage rather than high performance and complexity.

CRGREP searches for matching text in databases, various document formats, archives and other difficult to access resources. A command line tool for name and content text matching in database tables, plain files, MS Office documents, PDF, archives, MP3 audio, image meta-data, scanned documents, maven dependencies and web resources. CRGREP will search resources within resources of any arbitrary combination or depth, so text within a document within a zip archive, and so on. Here you...

A flexible command line tool to analyze COVID-19 csv files https://github.com/nytimes/covid-19-data https://ourworldindata.org/coronavirus-source-data The rpm build is rh7 the tgz installs on Windows cygwin.

Advances in high-resolution mass spectrometry facilitate the identification of hundreds of metabolites, thousands of proteins and their post-translational modifications. This remarkable progress poses a challenge to data analysis and visualization, requiring methods to reduce dimensionality and represent the data in a compact way. To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and extensive knowledge of the Perl-based tool, Circos. We present MS-Helios, an easy to use command line tool with multiple built-in data processing functions, allowing non-expert users to construct CPMs or in general terms circular plots with a non-genomic basis. ...

PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be...

DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily displayed by a web browser.

...It allows for data independent reproducible analysis creating protected environment which separates data from results through variable exportation. It comes as a command-line tool with a wizard menus and step-by-step tutorials. Pipeline Builder is written in Perl and it is crossplatform.

BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data.

A command line tool that converts a custom xml document (xsav) to a SPSS binary file (sav). It is often easy to generate xml files from software, and by using this tool a SPSS (computer tool for statistical analysis) binary file can easily be generated.

A command-line tool for applying the continuous wavelet transform with respect to predefined wavelets to sampled data.