Search Results for "throughput" - Page 2

Open3DQSAR is a free, open-source tool written in C aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields (MIFs).

An open-source software aimed at high-throughput generation of molecular interaction fields (MIFs)

he decreasing cost high-throughput technologies led to a number of sequencing projects consisting thousands of whole genomes. The paradigm shift from exome to whole genome brings a significant increase in the size of output files. Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies.

ipc-quartztime is an inter process communication library based on shared memory, mutexes and signals. ipc-quartztime is intended for high-speed and high-throughput communication between processes.

Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting in near perfect pre-assembly reads. ...

...ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. ...

The NovelSeq pipeline is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data.

...It can be inserted into any normal pipeline between two processes to give a visual indication of how quickly data is passing through, how long it has taken, how near to completion it is, and an estimate of how long it will be until completion. Additional support is available for multiple instances working in tandem, to given a visual indicator of relative throughput in a complex pipeline The README explains how to compile and install pv for cygwin. Know issues: pv can't lock mintty terminal. However it works when running pv from cmd.exe

Cpipe copies its standard input to its standard output while measuring the time it takes to read an input buffer and write an output buffer. Statistics of average throughput and the total amount of bytes copied are printed to the standard error output.

Juggernaut is a high throughput out of core sequence assembly algorithm. This program is very useful in assembly projects involving massive number of short reads which originate from high coverage of the genome.

fpsc is a Fast Parallel Stream Compressor. It can use multiple CPUs to compress (gzip or bzip2) a data stream. (from stdin to stdout) It is built to achieve maximum throughput, everything else (especially memory usage) can be sacrified.

NetIcon is a utility that sits in the Windows task bar and shows your network throughput. Requires WinPcap. NetIcon was modeled after Process Explorer, which only shows the CPU and IO load. Additionally it shows a hilbert curve "netblob" diagram.

wunkey (web monkey) is a Linux-based HTTP server written in C, designed to demonstrate modern advances in web server design. It permits scalability by adding cheap PCs, unfair scheduling for increased throughput, and fast serving of dynamic content.

FPGA based hardware card which implements above 4 giga bps network traffic throughput under affordable hardware cost. With linux driver and kernel patch, software based IPTables/netfilter firewall can be easily upgraded to a multi-giga high end firewall.

XVMSocket is a Linux Kernel Module that provides a new socket family for high throughput (40-70 times better than TCP/IP sockets) between applications running on different guest Linux VMs on the same Xen system. No changes to Xen or Linux required.

snmpcollector is a daemon/engine design for large-scale data collection via SNMP protocol. Uses a multi-threaded design to plan, control and distribute performance for optimum data collection throughput written in C. Uses database front- and back -end.

Low-level processor benchmark for x86 and amd64 processors: measures exact latency and throughput for each assembly instruction, and automatically finds execution units. Special focus on SIMD (MMX, SSE) instructions.

Tomahawk is a command line utility that supports high speeds bidirectional replay (300-750 Mbps) of saved tcpdump(8) files. Tomahawk is great for testing the throughput and blocking capabilities of network-based intrusion prevention systems (NIPS).

wibro helpful system utilities. for example wibro-apc control AP system, wibro-npt test network throughput metric of TCP and UDP wibro-anal is for debugging or monitoring wibro inner module but some degree it is specific.

Multispoof exploits weak authentication method based on IP-MAC pairs checking, implemented frequently in Ethernet networks by ISPs. This program allows to multiply user's throughput and serves as a demonstration of spoofing effectiveness.

thrulay-ng is a network capacity tester based on thrulay 0.6. Features include the ability to test delay along with throughput using TCP and the ability to send fine-grained Poisson test streams using UDP.

LIRTM is a LIghtweight Remote Throughput Monitor system, used for monitoring the total throughput of a network device on a remote system. This project is designed for use on small Linux broadband routers, and contains the daemon and a basic client.

iptotal is an IP traffic monitor. It listens to a network interface in non-promiscuous mode, and measures IP bandwidth usage. After the specified number of seconds, the average throughput is printed at total, input and output usage.

Both a network throughput testing tool and a simple demonstration of IPv6 socket programming. Also includes a reuseable IPv6 API emulation library.

ettcp is based on the venerable ttcp application. ttcp allows measurement of network throughput over TCP or UDP, between two nodes. ettcp adds several useful features to ttcp, while retaining bckwards compability.