Search Results for "genetics"
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Showing 15 open source projects for "genetics"
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Nemo
Individual-based forward-time genetics simulation software
Nemo is an individual-based, forward-time, genetically explicit, and stochastic simulation software designed for the study of the evolution of life history and quantitative traits, and genetic markers under various types of selection, in a spatially explicit, metapopulation framework. -
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Boon Rules
Study the computational basis of human learning and inference
The main problem of the machine learning is to find a scientific regularity in experimental observations. Many methods may be served - from baseless guesses to an accurate investigation of models - to create a possible scientific interpretation. This approach consider on searching for underlying laws. Laws can be evoked from the massive data sets (genetics, robot sensors, social networks, adverisement) available now (so called the Big Data). -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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EggLib
Evolutionary Genetics and Genomics Library
EggLib has moved to http://mycor.nancy.inra.fr/egglib/ since version 3.0.0. -
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Application to estimate haplotypes and other genetics data, based on maximum likehood approach. It can handle present-absent as well as multiallelic loci.
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SMARTPOP
Fast forward-in-time simulation software for population genetics
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CDPOPgui
GUI Frontend for CDPOP
CDPOPgui is a GUI Frontend for CDPOP What is CDPOP? CDPOP (Cost Distance POPulations) is a spatially-explicit simulator of gene-flow in complex landscapes to explain observed population responses and provide a foundation for landscape genetics. The program implements individual-based population modeling with Mendelian inheritance on a resistant landscape. Simulation begins with an initial homogeneous population and followed by divergence through time as functions of individual based... -
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POPBAM is a tool to perform evolutionary or population-based analyses of next-generation sequencing data. POPBAM takes a BAM file as its input and can compute many widely used evolutionary genetics measures in sliding windows across a genome.
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OpenAIL
Open Artificial Intelligence Library
[Open Artificial Intelligence Library]. This library main goal is to provide a tool box to those who want to use algorithm such as neural network or genetics Algorithm and all algorithms that are commonly within the Artificial Intelligence field. -
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Bioinformatics Learning Tutorial
An interactive undergraduate biology tutorial
Interactive tutorials for undergrad genetics students illustrating DNA replication, transcription, and translation. Original color graphics and animations. * Source requires Qt libraries (http://qt-project.org/downloads) * Windows version @: http://www.cs.transy.edu/nsmith/BLT_Windows.zip -
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IMPORTANT UPDATE! This project has migrated to https://github.com/polyworld/polyworld . This SourceForge repository is now obsolete. Polyworld is one of the earliest and most sophisticated artificial worlds developed to study Artificial Life and Artificial Intelligence, using computational genetics, physiology, metabolism, neural networks, learning, vision, and behavior.
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Ouroborus is an artificial life framework for mobile agents on a background of cellular automata. It can be used to teach and research topics such as population genetics, ecology and evolution. The demo includes a curses view and live Csound audio.
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Opensource software projects for genetics and genomics from Sage Bionetworks.
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GENtle is a free multipurpose tool for genetics and biochemistry. It manages DNA and amino acid sequences, does PCR, restriction, ligation, sequence annotation etc.
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