Showing 3 open source projects for "bioperl"

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  • Business Continuity Solutions | ConnectWise BCDR Icon
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    Build a foundation for data security and disaster recovery to fit your clients’ needs no matter the budget.

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    BamBam

    Tools for genomic analysis

    BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more. Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball.
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    Bioinformatic C++ library providing a central engine to other bio* libraries (BioPerl, BioPython, BioJava).
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  • 3
    Cis-Regulatory analysis modules. Includes frequenc/weight matrices scanning at genome level, annotation by using DB access to ensembl, genekeydb, etc. and visualization (through Bioperl or as custom UCSC tracks). May include gene set analysis in future.
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