Search Results for "computing" - Page 7
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Showing 535 open source projects for "computing"
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ThunderstormDistributor
Distribute jobs to compute nodes on dynamic clusters
ThunderstormDistributor is a queuing system that distributes jobs and computational workload across dynamic clusters in the cloud. It manages the assignment of jobs to maximize CPU and memory usage and prevent oversubscription of compute nodes. It also performs advanced statistics collection on individual compute nodes and jobs to graph the distribution of disk, network, CPU, and memory usage over time, which facilitates the advanced optimization and tuning of computational workflows. -
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CADET
Chromatography Analysis and Design Toolkit
...The CADET solver covers a wide range of GRM variants, combining different transport and binding models with state-of-the-art mathematical algorithms and scientific computing techniques. The CADET framework also comprises a MATLAB interface and standard routines for parameter estimation, process optimization and experimental design. CADET is freely distributed as a contribution to the scientific community. If you find it useful for your own work, we would appreciate acknowledgements of the CADET software and citations of our papers: http://doi.org/10.1016/j.compchemeng.2010.03.008 http://doi.org/10.1016/j.compchemeng.2018.02.025 -
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alignlib is a C++ library for computing and manipulating sequence alignments of protein sequences. Most of the functions and classes are exported to python thus permitting easy scripting of complex tasks. Alignlib has moved to github (https://github.com/AndreasHeger/alignlib)
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gridrpcdm
Library implementing the GridRPC and GridRPC DM OGF stantards.
This library is a common implementation of both the Open Grid Forum GridRPC API _and_ GridRPC API Data Management standards. It is completely modular and already supports middleware modules for DIET and Ninf, as well as data manager modules for iRods, OwnCloud, rsync, scp. The installation is made easy with cmake and testing examples can be launched in a one line command. -
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FreDec
Parallelized FREquency DEComposer algorithm
...After selection of the initial frequency candidates, the algorithm passes through all their possible combinations and estimates their multi-frequency statistical significance. In the end, it prints out the set of largest frequency tuples that were still found significant. The GPU computing is implemented through CUDA and brings a significant performance increase. It is still possible to run FreDec solely on CPU, if no suitable GPU device is available in the system. See the details of the underlying theory in Baluev 2013, MNRAS, V. 436, P. 807 The description of the algorithm itself can be found in arXiv:1309.0100. ... -
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Kepler Monitoring
Kepler is a monitoring system for HPC clusters
Kepler is a monitoring system for HPC clusters : it allows users to monitor cluster elements like nodes, network devices and storage nodes. Analyse can be centered on jobs to determine performances and behaviours. -
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FlowVR is an open source middleware tailored for high performance in situ data processing and analytics running on large parallel machines
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems. -
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TPC - Trusted Platform Commander
Trusted Computing Platform Management Tool
The Trusted Platform Commander (TPC) is an open source software for the management of a Trusted Computing Platform (TCP) and its Trusted Platform Module (TPM). With an user-friendly Graphical User Interface (GUI) even not experienced user can maintain the TCP without any loss of security. -
Cut Data Warehouse Costs by 54%BigQuery delivers 54% lower TCO with exabyte scale and flexible pricing. Free migration tools handle the SQL translation automatically.
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CANPRIC, Modern ANPR SDK Engine
ANPR SDK
Read multi-plates in one image without number limitation. 50-55 millisconds for processing one frame of image. Simplest API The smallest, simplest, fastest Modern ANPR SDK CANPRIC is a modern ANPR/LPR engine, which based on machine learning and high performance computing(HPC). The ambition of CANPRIC is leading the ANPR industry into intelligent times and using the HPC technique to get high speed of processing. -
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
...Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. Moreover, PASHA achieves the fastest speed for all three datasets on a single CPU. ... -
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Handles Hexahedral, Tetrahedral, Quadrilateral, and Triangle meshes. Lagrangian, Hierarchic, and Monomial finite elements. Interface to PETSc solvers, adaptive mesh refinement, and extreme portablility.
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Hellsing
Distributed JavaScript Engine
Hellsing is a distributed JavaScript engine. -
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Portable Linux
Portable Ubuntu Linux for Scientific Computing
...Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington -
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Visu@lGrid
Visu@lGrid - IDE for Building BOINC Projects
Visu@lGrid - UML for BOINC: A Modelling Language Approach for the Development of Distributed Applications based on the Berkeley Open Infrastructure for Network Computing -
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psicode
An open-source quantum chemistry program package
PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models. -
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DistributedCL is a middleware that provides location-transparent GPU processing to applications developed using the OpenCL API. Moved to GitHub. https://github.com/andrelrt/distributedcl
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The Network-Integrated Multimedia Middleware (NMM) is a flow graph based multimedia framework that allows to create distributed multimedia applications: local and remote multimedia devices or software components can be combined.
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gossimon
Cluster Monitoring tool using gossip mechanisem
Gossip based distributed information monitoring system for a cluster of Linux nodes. The package includes a daemon to run on every node of the cluster and client programs for obtaining and displaying information about all nodes -
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Retroino
Retronio - classic vintage software on your Arduino
Did you ever miss that classic vintage software feeling of the good old wild days of 8 bit computing? Here's the solution - grab your Arduino and run classic old fashioned SW on it, ranging from TicTacToe on a 16x2 character LCD to a full featured spreadsheet application on your TV. Inside the Retroino project, you'll find a bunch of useful application routines for your own projects like e.g. a menu system or simple value entry fields for character based displays. -
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...Computational Geometry & Applications (Special issue) World Scientific, 2013. [2] I.Z.Emiris, V.Fisikopoulos, C.Konaxis, L.Peñaranda. An output-sensitive algorithm for computing projections of resultant polytopes. In Proc. 28th Annual Symposium on Computational Geometry (SoCG 2012), pp.179-188, Chapel Hill, USA.
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...It has unique features like automatic derivation of depth grammar, production of the derivation tree including it's C interface which provides access to the abstract syntax tree, preservation of full source information and pretty printing to facilitate source-source translation, persistence to aid rapid interpreter writing. For application in contemporary computing environments, it supports unicode, reentrancy and offers thread-safeness.
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Fractal explorer
Explore fractals with arbitrary precision, compute them over network
Designed for distributed computing over the network -
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ViennaX
A flexible plugin execution framework for scientific computing in C++
Welcome to the project homepage of ViennaX, a high-performance scientific computing C++ framework for executing plugins. A plugin system allows to wrap already available functionality into reusable components, which can have data input and output dependencies via a socket system. Different scheduler kernels are available, supporting serial and MPI-based distributed executions, supporting task and data parallelism.
