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Featurama, superceding ProbePicker, is a bioinformatics program used to generate short probes from large datasets for use in DNA microarray experiments. A new project, BioSap, will extend the functionality of featurama.
BioSap-Blast Integrated Oligonucleotide Selection Accelerator Package. BioSap selects unique oligos for microarrays by detecting user-defined parameters and running parallel instances of Featurama and Blast on compute engines, producing xml output files.
The purpose of this "General Game Framework" is to make easier and speed up the development of a wide range of games. The main goal is to be simple, flexible and well documented. It's like a High level (above graphics and sounds) library for games.
Powerful platform for creating networked multiplayer 3D games. The system includes specifications for a client engine and 2 protocols. Demo apps: mud/moo proxy, tetris. Currently uses OpenGL, VRML, java, tcl. Client/server architecture for security.
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EFP aims to create embedded Freenet clients. It's ultimate goal is to provide a stable enough protocol that can be scaled to hundreds, perhaps thousands of embedded devices working off a one or two nodes.
Java access to USB, currently using kernel 2.4 Linux-USB support. There is a "core" API for accessing USB devices, and simple tools including a USB viewer in Swing. Applications are being developed separately, including digital camera support.
JMouseWheel implements mouse wheel support for Java applications running on Win32 platforms. This is basically a much needed work-around until Java 1.4 ships in early 2002. We're looking for people to implement support for other platforms.
PortableGUI is a C++ framework (Java-like classes) for creating portable user interfaces with native controls and native look & feel. An application linked with PortableGUI will use Gnome/GTK widgets on Unix and Windows controls on Win95/98/2K/NT.
EGC is a garbage collector designed for embedded systems. It is fully concurrent and can bound its runtime. It runs in fixed memory spaces. It works with GCJ and with C/C++ programs.
xdProf is a tool that captures and analyzes stack traces sent at a fixed interval from Java Virtual Machines in a distributed system. The xdProf client uses a C/C++ Java Virtual Machine Profiling Interface (JVMPI) library and works on many platforms.
XML Validator is a framework designed to provide developers with a simple, extensible and modular way to validate XML documents. The XML descriptor language, which is similar to XML-schema and against which an XML Document is validated, is now dynamic.
Omseek has been renamed to Xapian. Xapian is a Search Engine Library, written in C++ with bindings for Perl, Python, PHP, Java, Tcl, C# and Ruby. It allows you to easily add advanced indexing and search facilities to your applications.
GenP Genetic Programming Library is a cross-platform library of genetic programming functions for generic application. Initially it's purpose is for machine learning in board games but should be applicable to any purpose.
CGI++ is a cross platform CGI C++ class library that enables programmers to easily create CGI applications. I would ultimately like to create a cross platform graphical environment, probably written in Java, for creating CGI applications using CGI++.
CAVOR is an engine for building apps that involve both graphic and text/numeric data. Primarily GIS is the initial focus, but consider also CAD, CASE, project management (eg PERT charts), and others. Built-in scripting, C API, also supports Tcl and Java.
JTape provides a JavaLibrary for tape device access that is usable from most operating system platforms. The library is easily extensible allowing additional platforms to be added.
Pure Interaction is a formal model on how to encode human-computer interaction.
This project will implement the Pure Interaction Corba Interfaces and create an implementation
for C++ and X-Windows called the FOH-framework.