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These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon.

OpenXfem++ is an XFEM (eXtended Finite Element Method) written in C++ using object-oriented techniques. It supports propagation of multiple two dimensional cracks. Furthermore, it allows composite materials to be modeled on a structured mesh which is independent of the inclusions. The implementation is described in the following article An extended finite element library S Bordas, PV Nguyen, C Dunant, A Guidoum, H Nguyen‐Dang International Journal for Numerical Methods in Engineering 71...

The OFR method is a type of steered molecular dynamics method for determining potentials of mean force (PMF) (Phys. Rev. E, 2011, 83: 021114) and local diffusion coefficients, D(z) (Phys. Rev. E, 2012, 86: 036707). OFR-AT is a fast and convenient program for analyzing large output data files from the OFR method, and returns the information necessary to quickly and easily calculate the PMF and D(z) in a spreadsheet. The software is described in detail in the following article: J. Comp. Phys...

Investigo is a toolkit for DirectX9 performance analysis and debugging. For any DirectX9 application: view live performance graphs via the embedded HTTP server and capture performance metrics for offline analysis. Investigo is released under an MIT style licence. The first binary release is now up. An article on Investigo can be found on Code Project: http://www.codeproject.com/Articles/448756/Introducing-Investigo-Using-a-Proxy-DLL-and-embedd If you want to work...

The Scope is to create a program, which can edit an image with the Droste effect. This program also provides some extra functions like rotating, scaling, converting and filtering. There exist some other programs which also have the some functions, but they are often very expensive and complex to use. For more Information: http://www.josleys.com/article_show.php?id=82 See article: http://www.docma.info/software/artikel/detail/droste-bilder-selbstgemacht.html?L=0cmd%253Dinfomailcmd...

IdCREATE stands for "Idea Creation, Representation & Execution Automated Tools and Engine". This is intended to be a graphical tool for 1) representing your thoughts and ideas in a mindmap-like charts and 2) implementing them as code, article text, etc

Star Wars Galaxy 3D represents a map of the Star Wars galaxy in 3D like a navigation computer. You can search for planets and on the bottom you can then read an article about the planet.

Hampton is an application of genetic programming (GP) to the pathfinding problem, first applied by Rick Strom. This project was the focus of a gamasutra.com article, by Strom, on GP and pathfinding.

CppUtx is a unit test framework for C++ based on the article `Cpp Utx Overview` written by Robert DiFalco and some parts of CxxTest. It depends on the standard and the boost library.

This is an academic project. Implementation of one ( or possibly two ) encryption boxes, that convert a one dimensional stream of bits into a two dimensional matrix, with a constraint. This is called bit stuffing. The article, on which our implement

A fast, portable, web-based, article portal system.

This low cost project is a RC servo like position control of one or two geared motor(s) with a pot as angle feedback. You can send the arduino microcontroller a value from 0 to 1023 and the arduino will control the motor speed and direction to reach your target value. The PID algorithm will insure that the motor will not get into hold vibrations if the pot has some influences. This article will describe where you have to take attentions and what you have to setup to get the best results...

A feature-rich dictionary lookup program, supporting multiple dictionaries' formats, featuring perfect article rendering with the complete markup, illustrations and other content retained, and allowing to type in words without any accents or correct case