Search Results for "cell"
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Showing 93 open source projects for "cell"
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address the statistical challenges of single cell RNA-seq. ... -
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CellTypist
A tool for semi-automatic cell type classification, harmonization
CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. -
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harmonypy
Integrate multiple high-dimensional datasets with fuzzy k-means
Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
...This model of prior information on potential ligand-target links can then be used to infer active ligand-target links between interacting cells. NicheNet prioritizes ligands according to their activity (i.e., how well they predict observed changes in gene expression in the receiver cell) and looks for affected targets with high potential to be regulated by these prioritized ligands. -
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CGAL
The Computational Geometry Algorithms Library
...These algorithms are useful in a wide range of applications, including computer aided design, robotics, molecular biology, medical imaging, geographic information systems and more. CGAL features a great range of data structures and algorithms, including Voronoi diagrams, cell complexes and polyhedra, triangulations, arrangements of curves, surface and volume mesh generation, spatial searching, alpha shapes, geometry processing, and many more. The use of these result in beautiful, visually complex and accurate representations. -
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marimo
A reactive notebook for Python
...You'll always be able to reproduce your collaborators' results. Notebooks are executed in a deterministic order, with no hidden state, delete a cell and marimo deletes its variables while updating affected cells. -
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Wflow.jl
Hydrological modeling
...Wflow is conceived as a framework, within which multiple distributed model concepts are available, which maximizes the use of open earth observation data, making it the hydrological model of choice for data-scarce environments. Based on gridded topography, soil, land use and climate data, wflow calculates all hydrological fluxes at any given grid cell in the model at a given time step. -
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Dompdf
HTML to PDF converter for PHP
dompdf is an HTML to PDF converter. At its heart, dompdf is (mostly) a CSS 2.1 compliant HTML layout and rendering engine written in PHP. It is a style-driven renderer, it will download and read external stylesheets, inline style tags, and the style attributes of individual HTML elements. It also supports most presentational HTML attributes. PDF rendering is currently provided either by PDFLib or by a bundled version the R&OS CPDF class written by Wayne Munro. (Some important changes have... -
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tidyr
Tidy Messy Data
tidyr is a core tidyverse package designed to help reshape and clean messy datasets into tidy data—i.e., data frames where each variable is a column, each observation is a row, and each value is a cell. -
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React DayPicker
Date picker component for React
Flexible, highly customizable, localizable, with ARIA support, no external dependencies, 7.4kB gzipped. Define the disabled or selected days and change the aspect of each day cell with modifiers. Display the date picker in an overlay using the DayPickerInput component. Specify which days should be selected in your component’s state. Use your own translation strings or import those from moment.js, if you use it. react-day-picker is designed to cover the most common needs for a date picker in web applications. ... -
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RevoGrid
Powerful virtual data grid smartsheet with advanced customization
Support Millions of cells and thousands of columns easy and efficiently for fast data rendering. Easy to use. For large organizations managing massive datasets. Performance and scalability to handle even the most complex data tables. Rapid prototyping with intuitive and extendable codebase. Agility to build robust data-driven applications in no time. Quickly build elegant and efficient data grids. Lightweight yet powerful architecture lets you easily scale as your needs grow. -
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Mercury
Convert Python notebook to web app and share with non-technical users
Turn Python notebooks to web applications with open-source Mercury framework. Hide code and add interactive widgets. Non-technical users can tweak widgets and execute notebook with new parameters. The core of Mercury is Open Source under AGPLv3. We provide Mercury Pro with additional features, dedicated support and friendly commercial license. Mercury is a perfect tool to convert Python notebook to interactive web application and share with non-programmers. You define interactive widgets for... -
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ipychart
The power of Chart.js with Python
...The charts created are fully configurable, interactive, and modular and are displayed directly in the output of the cells of your jupyter notebook environment. Charts are fully interactive, you can hover it to display tooltips and select the information you want to see directly from the output cell of your notebook. All the types of charts present in Chart.js are exposed in ipychart. Even complex features such as mixed-types charts are available. Charts are highly customizable and all Chart.js options are available in ipychart. You have complete control over the appearance of your chart. -
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Google Spreadsheets Python
Google Sheets Python API
gspread is a Python API for Google Sheets. A service account is a special type of Google account intended to represent a non-human user that needs to authenticate and be authorized to access data in Google APIs [sic]. Since it’s a separate account, by default it does not have access to any spreadsheet until you share it with this account. Just like any other Google account. To access spreadsheets via Google Sheets API you need to authenticate and authorize your application. Older versions of... -
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ImportExcel
PowerShell module to import/export Excel spreadsheets, without Excel
ImportExcel is a popular PowerShell module that enables reading, writing, and manipulating Excel spreadsheets without requiring Microsoft Excel to be installed on the host. It exposes straightforward cmdlets like Import-Excel and Export-Excel that convert between Excel sheets and PowerShell objects, making it simple to pipeline tabular data into reporting and automation flows. Advanced features include adding and formatting tables, setting number/date formats, creating charts, and applying... -
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nb-clean
Clean Jupyter notebooks of outputs, metadata, and empty cells
nb-clean cleans Jupyter notebooks of cell execution counts, metadata, outputs, and (optionally) empty cells, preparing them for committing to version control. It provides both a Git filter and pre-commit hook to automatically clean notebooks before they're staged, and can also be used with other version control systems, as a command line tool, and as a Python library. It can determine if a notebook is clean or not, which can be used as a check in your continuous integration pipelines. nb-clean can also be used as a pre-commit hook. ... -
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D-Tale
Visualizer for pandas data structures
...To help guard against users loading the same data to D-Tale multiple times and thus eating up precious memory, we have a loose check for duplicate input data. If you are running ipython<=5.0 then you also have the ability to adjust the size of your output cell for the most recent instance displayed. JupyterHub has an extension that allows to proxy port for user, JupyterHub Server Proxy. -
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Spreadsheet Compare
Performs a cell-by-cell comparison of Excel Worksheets.
Spreadsheet Compare (Excel compare) is a Microsoft Excel Add-In, written in VBA, that performs a cell-by-cell comparison of Worksheets within the same or different Workbooks. Requires Excel 2000 or later. Check out the Home Page for more info! -
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atomes
Analysis, visualization, edition of 3D atomistic models
atomes is a Free (Open Source) cross-platform software licensed under the terms of the Affero GPL v3+ license. atomes is a toolbox developed to analyze, to visualize and to create/edit 3D atomic scale models. atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. Sébastien Le Roux, research... -
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Cash Flow
Personal finance app to keep track of cash, income, expense and budget
Cash Flow is a simple personal finance app that keeps track of your monthly income and expense by categories. You can add reminders of upcoming credit card payments. View your account balances at a glance to quickly make sure you have enough money in each account. Start with as little as one month of transactions from a bank. Cash Flow supports checking, savings, credit cards, and cash expense accounts. Cash Flow stores data in text files. The fields in a transaction are colorized... -
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Nepali Calendar For PC - NepDate Widget
Premium Nepali Calendar, Date Converter, and Productivity Tools for PC
...Date row: day of week, BS date, AD date. Each element toggles independently. Fades when not hovered. Calendar - Full BS month grid with English day numbers alongside each cell, tithi, public holidays, and festival highlights. Today is marked with your accent color. A live countdown to the next public holiday appears in the header. On the first launch of each day, a notification lists today's festivals and observances. -
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GDS3D
Interactive 3D Layout Viewer for GDSII
GDS3D is a cross-platform 3D hardware accelerated viewer for chip layouts. Read standalone GDS files or use the Cadence plugin for easy integration with your Virtuoso environment. Developed by PhDs of the IC-Design Group, University of Twente, The Netherlands The GDS3D project is also hosted on Github: https://github.com/icdut24/GDS3D, but currently not actively maintained by us. Forks can be found at https://github.com/trilomix/GDS3D and https://github.com/skuep/GDS3D -
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis function and beautiful operation interface of HiPlot (https://hiplot.cn), which I developed based VUE.js and Node.js, etc. -
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scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
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SimpleXlsxWriter
C++ library for creating XLSX files for MS Excel 2007 and above.
This library represents XLSX files writer for Microsoft Excel 2007 and above. The main feature of this library is that it uses C++ standard file streams. On the one hand it results in almost unnoticeable memory and CPU resources consumption while processing (that may be very useful at saving a large data arrays), but on the other hand it makes unfeasible to edit data that were written. Hence, if using this library the structure of the future report should be known enough. The library...
