Search Results for "clustering"
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Showing 79 open source projects for "clustering"
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Clustering.jl
A Julia package for data clustering
Methods for data clustering and evaluation of clustering quality. -
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scikit-learn
Machine learning in Python
scikit-learn is an open source Python module for machine learning built on NumPy, SciPy and matplotlib. It offers simple and efficient tools for predictive data analysis and is reusable in various contexts. -
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The ARCHModels Package for Julia
A Julia package for estimating ARMA-GARCH models
ARCH (Autoregressive Conditional Heteroskedasticity) models are a class of models designed to capture a feature of financial returns data known as volatility clustering, i.e., the fact that large (in absolute value) returns tend to cluster together, such as during periods of financial turmoil, which then alternate with relatively calmer periods. This package provides efficient routines for simulating, estimating, and testing a variety of GARCH models. ARCH (Autoregressive Conditional Heteroskedasticity) models are a class of models designed to capture a feature of financial returns data known as volatility clustering, i.e., the fact that large (in absolute value) returns tend to cluster together, such as during periods of financial turmoil, which then alternate with relatively calmer periods. -
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dlib
Toolkit for making machine learning and data analysis applications
Dlib is a modern C++ toolkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. It is used in both industry and academia in a wide range of domains including robotics, embedded devices, mobile phones, and large high performance computing environments. Dlib's open source licensing allows you to use it in any application, free of charge. Good unit test coverage, the ratio of unit test lines of code to library lines of code is... -
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Orange Data Mining
Orange: Interactive data analysis
...Perform simple data analysis with clever data visualization. Explore statistical distributions, box plots and scatter plots, or dive deeper with decision trees, hierarchical clustering, heatmaps, MDS and linear projections. Even your multidimensional data can become sensible in 2D, especially with clever attribute ranking and selections. Interactive data exploration for rapid qualitative analysis with clean visualizations. Graphic user interface allows you to focus on exploratory data analysis instead of coding, while clever defaults make fast prototyping of a data analysis workflow extremely easy. ... -
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hctsa
Highly comparative time-series analysis
hctsa is a Matlab software package for running highly comparative time-series analysis. It extracts thousands of time-series features from a collection of univariate time series and includes a range of tools for visualizing and analyzing the resulting time-series feature matrix. -
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Elasticsearch
A Distributed RESTful Search Engine
Elasticsearch is a distributed, RESTful search and analytics engine that lets you store, search and analyze with ease at scale. It lets you perform and combine many types of searches; it scales seamlessly, and offers answers incredibly fast with search results you can rank based on a variety of factors. Elasticsearch can be used for a wide variety of use cases, from maps and metrics to site search and workplace search, and with all data types. -
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Beads Viewer
Task management system for coding agents
Beads Viewer is a visualization tool designed to display, inspect, and interact with “bead plots,” graphical representations often used in statistical analysis, time series exploration, or clustering visualizations where data points are represented as beads on strands or axes to emphasize patterns and relationships. The viewer provides an intuitive graphical interface that automatically renders bead plots from structured data inputs, enabling users to observe trends at a glance, highlight clusters, or drill down into individual sequences. ... -
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HyperTools
A Python toolbox for gaining geometric insights
...Functions for plotting high-dimensional datasets in 2/3D. Static and animated plots. Simple API for customizing plot styles. Set of powerful data manipulation tools including hyperalignment, k-means clustering, normalizing and more. Support for lists of Numpy arrays, Pandas dataframes, text or (mixed) lists. Applying topic models and other text vectorization methods to text data. HyperTools is designed to facilitate dimensionality reduction-based visual explorations of high-dimensional data. The basic pipeline is to feed in a high-dimensional dataset (or a series of high-dimensional datasets) and, in a single function call, reduce the dimensionality of the dataset(s) and create a plot. -
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awesome-single-cell
Community-curated list of software packages and data resources
...The package incorporates novel and established methods to provide a flexible framework to perform filtering, quality control, normalization, dimension reduction, clustering, differential expression and a wide-range of plotting. An analytical framework for big-scale single cell data. Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction. -
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MOA - Massive Online Analysis
Big Data Stream Analytics Framework.
A framework for learning from a continuous supply of examples, a data stream. Includes classification, regression, clustering, outlier detection and recommender systems. Related to the WEKA project, also written in Java, while scaling to adaptive large scale machine learning. -
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openQRM - Cloud Computing Platform
Get latest Edition here: http://www.openqrm-enterprise.com.
openQRM is a web-based open source datacenter management and hybrid cloud computing platform that integrates flexibly with existing components in enterprise data centers. Releases available at https://github.com/openQRM/openqrm-community. Please visit http://www.openqrm-enterprise.com for latest 5.3 free Community Release. Includes important security updates, bugfixes and enhancements especially for KVM and Cloud plugin. openQRM abstracts Virtualization and supports the following... -
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Social Network Visualizer
Social Network Analysis and Visualization software
Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder) -
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Faum
Fast Autonomous Unsupervised Multidimiensional Classification
This is the proof-of-concept implementation of the FAUM Clustering method. This implementation was used to perform the published results and is now released in the hope that it will be useful. -
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Scipio ERP
An open source e-commerce solution
Scipio ERP is an open source e-commerce solution for complex business applications. The vast set of standard applications really lend themselves to further customization. With its built-in clustering and caching mechanisms, the software scales well with large-size operation, making it an ideal choice for mid- to large size companies, or as a hub for an integrated business architecture. -
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Crane
Crane is a FinOps Platform for Cloud Resource Analytics and Economics
Crane is a FinOps Platform for Cloud Resource Analytics and Economics in Kubernetes clusters. The goal is not only to help users to manage cloud cost easily but also to ensure the quality of applications. -
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UniHA
ZFS High Availability and Continuous Replication for any application
Data Storage, protection and management system for Debian Linux and ZFS. Dual node Metro Active/Passive and Active/Active High Availability for any application. Converts any application, program and script into a highly available mission critical solution, with Webmin fully web-based administration interface. -
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DynaQ
Innovative text document search. http://dynaq.opendfki.de for details.
The goal of DynaQ is to develop an inquiry system to explore the personal information space, supporting you with the searching paradigm 'orienteering'. DynaQ is a (desktop)search engine with enhanced functionality for file, email and blog search. Look at our GitLab homepage for sourcecode and documentation: http://dynaq.opendfki.de -
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MyCAT
Active, high-performance open source database middleware
MyCAT is an Open-Source software, “a large database cluster” oriented to enterprises. MyCAT is an enforced database which is a replacement for MySQL and supports transaction and ACID. Regarded as MySQL cluster of enterprise database, MyCAT can take the place of expensive Oracle cluster. MyCAT is also a new type of database, which seems like a SQL Server integrated with the memory cache technology, NoSQL technology and HDFS big data. And as a new modern enterprise database product, MyCAT is... -
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NOVA
Analysis and visualization of complexome profiling data.
NOVA is a program designed to analysis complexome profiling data (Heide et al., 2012). A graphical user interface (GUI) provides various visualization tools, such as heat maps and 2D plots. Several hierarchical clustering algorithms (e.g., single linkage, average linkage, Wards linkage), different distance measures (e.g., Euclidean distance, Manhattan distance, Pearson distance), and various normalization techniques are implemented. Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. ... -
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Spectral Python
A python module for hyperspectral image processing
Spectral Python (SPy) is a python package for reading, viewing, manipulating, and classifying hyperspectral image (HSI) data. SPy includes functions for clustering, dimensionality reduction, supervised classification, and more. -
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ComplexHeatmap
Make Complex Heatmaps
...It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. Highly customizable layout: combining different heatmaps, arranging and splitting, dealing with multiple heatmap merges, combining with other plots etc. Integration with Shiny / interactive heatmaps via companion packages (InteractiveComplexHeatmap) to allow interactivity, etc. -
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VividSTORM
Correlated confocal and SMLM data visualization and analysis
VividSTORM is a free and open-source standalone software with graphical user interface, for the correlated visualization and analysis of superresolution single molecule localization microscopy (SMLM) molecule lists and conventional pixel intensity-based images. The localization points (LPs) within this ROI can be analyzed using the selected built-in functions. NOTE: If you encounter issues not addressed by the user guide, please contact by message on this site or via e-mail for... -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems. ... -
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Toolbox for handling X-ray transmission image data collected using the Xradia TXM system. We are constantly updating the code to implement other file formats as well - suggestions are welcome. Main articles: -) TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 19, 281-287. (2012) http://scripts.iucr.org/cgi-bin/paper_yard?hf5192 -) 3D elemental sensitive imaging using transmission X-ray...
