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corona is an exploratory bioinformatics project that applies reverse-engineering ideas to SARS-CoV-2. It treats biological information processing as an analogy to software analysis to help explain the viral genome from first principles. Python scripts download genomic sequences from GenBank and translate RNA into amino-acid chains. The project identifies and annotates proteins encoded by the genome. It also experiments with OpenMM for molecular simulation and protein-folding work. Supporting...
An note taking program with WebDAV sync capabilities. It works on a local (and WebDAV) directory and shows the items (text/image/binary) in a tree view. Any changes are reflected in the file system directly.
Features:
- group notes and images in a treestructure (using folders)
- can work on any directory on your machine
- technically works like a file browser with inline text editing
- synchronizes with any WebDAV server (optionally using SSL/TLS)
- allows one-way and two-way synchronization
- allows to encrypt your files locally and remote using AES256
- multi language support
You can obtain the full source code at:
https://crispy-cow.de/git/CrispySyncNote.git
Latest changes:
2.1.0: Updated for Java 9 and up
2.0.2: Added more UI translation, updated greek language (thanks to geogeo)
2.0.1: Bugfix: Sync state is now copied when duplicating workspace due to change in encryption settings
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools.
The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm.
VPLG is command line software.
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Qtombo is a tree and multiple-file based note system inspired by tombo (for windows and PPC), written with Qt. Supports the encrypted notes of tombo. One note is one file, plain text if possible. Notetree is a directory tree.
This is a pad for notes in tree-style, written in Qt4. DBNote uses SQLite DB for your notes. Some features: Notes are organized in tree. You can add icons (any bitmaps are imported to DB and you can use it). You can assign any your note an icon from
Note as of 2013-09-13: I'm moving this project over to github due to this:
http://www.gluster.org/2013/08/how-far-the-once-mighty-sourceforge-has-fallen/
Feel free to rejoin the more updated versions on
https://github.com/mnott/PDFOCRWrapper
Thanks.
Matthias
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This is a wrapper written in Java that allows to recursively iterate a directory structure and call an OCR engine on each found PDF on the condition that it hat not yet been called for that PDF. ...
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Todo Pad is a very simple application. There are two main components - Tree and Text Area. There is no advanced feature. It is as simple as a "Steno Note".