Showing 8 open source projects for "ion"

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  • 1
    AdminLTE

    AdminLTE

    Free admin dashboard template based on Bootstrap 4

    AdminLTE is a fully responsive administration template. Based on Bootstrap 4.6 framework and also the JS/jQuery plugin. Highly customizable and easy to use. Fits many screen resolutions from small mobile devices to large desktops. AdminLTE.io just opened a new premium templates page. Handpicked to ensure the best quality and the most affordable prices. AdminLTE has been carefully coded with clear comments in all of its JS, SCSS and HTML files. SCSS has been used to increase code...
    Downloads: 359 This Week
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  • 2

    TaBS-Pipe

    Targeted Bisulfite Sequencing Data Analysis Pipeline v1.0.2

    A pipeline to analyze the data obtained from targeted bisulfite sequencing through the ion-torrent platform. TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are: -Bisulfite mapping and methylation calling in one single step -Supports single-end read alignments -Alignment seed length, number...
    Downloads: 0 This Week
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  • 3

    Kinetic Model Builder

    GUI for building, simulating and optimizing kinetic models.

    .../EigenLab). Convenient simulation and summarization across 2-dimensional sets of stimulus conditions makes constructing stimulus-response curves incredibly simple. For ion channels, this is useful for simulating dose-response or current-voltage curves both with and without a secondary stimulus (e.g. some drug). A series of video tutorials are available at https://www.youtube.com/watch?v=7I2XPkdOvCg&list=PL-J_lULjiFsCPL2pkz8_tFe_aJ4Fc8a8k&index=1.
    Downloads: 3 This Week
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  • 4

    SIMION Analyser

    Windows program to analyse SIMION data

    Windows program to analyse data recorded by popular ion trajectory simulation software SIMION.
    Downloads: 1 This Week
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  • 5

    MS2Browser

    LC-MS/MS data browser designed for siderophore analysis

    MS2Browser is a tool for interactive pre-processing, analysis and visualization of LC-MS/MS data. Input is an mzXML file with centroided LC-MS/MS data. The program is written in MatLab and it was designed for the analysis of siderophores (iron transporting small molecules) in bacterial media. Some of the functionality and use of MS2Browser is described as part as an open-access book...
    Downloads: 0 This Week
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  • 6
    islec

    islec

    ISL Solid-Liquid Equilibrium Calculator

    ISL Equilibrium Calculator,which process solid-liquid equilibrium calculation by using Harvie extended Pitzer's ion interaction electrolyte solution model and particle swarm optimization Gibbs free energy minimization (GEM). ISLEC is an efficient tool for solid-liquid equilibrium calculation, and can simulate the crystallization path of seawater and salt lake brines. ISLEC is suitable for related researches and process design.
    Downloads: 0 This Week
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  • 7
    A tool for visualization, classification, and quantification of three-dimensional secondary ion mass spectrometry data.
    Downloads: 0 This Week
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  • 8

    TABSAT

    Analysis Tool for Targeted Amplicon Bisulfite Sequencing

    TABSAT - Targeted Amplicon Bisulfite Sequencing Analysis Tool A tool for analyzing targeted bisulfite sequencing data generated on an Ion Torrent PGM / Illumina MiSeq. The workflow starts with raw sequencing data, performs quality assessment, and uses a tailored version of Bismark to map the reads to a reference genome. Results are aggregated across all samples, presented in table format, and visualized as lollipop plots. In addition, due to the long read length of Ion Torrent reads...
    Downloads: 0 This Week
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