A file format for exchanging computational models in systems biology
Framework for Systems Biology
Class library for computational cybernetics
PySCeS is the Python Simulator of Cellular Systems
Pascal library for bioinformatics
A documentation and report generator for systems biological models
Accurate and efficient Java library that simulates biological models
Multiscale Neuroscience and Systems Biology Simulator
'Hierarchical Bond Graph Modelling of Biochemical Networks'
Simple ODE solver for dynamical systems
mean first passage times and node occupancies calculations
An R package for identifying biologically perturbed networks