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Amalthea is a collection of scripts (mainly Python, glued with Bash scripts) for *nix systems that helps to simultaneously collect information from multiple laboratory balances oriented to gravimetric measurement of plant transpiration.
Graph-based Extraction and Summarization - a generic graph-based summarization framework. Basic functionality is provided - third-party modules can be plugged in.
A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.
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The Xtal System is a comprehensive suite of small molecule structural solution, refinement and analysis software, supporting both X-ray, neutron and electron diffraction data. It runs on both Unix and MS Win32 platforms and uses tcl/tk graphics.
This is a c-library that provides tools for advanced
analysis of electrophysiological data. It features
denoising, unsupervised classification, time-frequency
analysis, phase-space analysis, neural networks, time-warping and
more.
icetools provides a development environment for numerical ice flow models/simulations. Nonlinear rheology and Stokes approach are implemented. "Ready to use" programs/scripts are available based on different numerical libraries, from educational to HPC
A plug-in for Abaqus FEA with empiric data for many types of materials (linear, nonlinear, ortotropic). A simple GUI for creating properties for common materials and sections for bulk and shells.
L.E.I.C.A. (Long Exposure Internet CAmera) is an application that takes input from your webcam, or v4l2 device, and makes a long-exposure image.
Until now there's only a python binding for this app, soon there will be a C/C++ SDL one
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NetBuilder' is a tool for building, visualizing, and simulating multi-layered biological networks, structured as hierarchical Petri-nets. It has a built-in stochastic simulator, but also provides easy access to other simulation and analysis.
WARNING! HPGL source code (NOT the releases, they are still here) now moved to the GitHub at https://github.com/hpgl/hpgl. Please, update your bookmarks!
The goal of the See&Touch project is to design/implement a special mouse for disabled people, which allows a person to fully control a computer by using just vision and one single body movement. This project develops hardware, firmware and software.
OWSLib is a Python package for client programming with Open Geospatial Consortium (OGC) web service (hence OWS) interface standards, and their related content models.
A project to increase free Arabic fonts on Unix/Linux
Arabeyes is a Meta project that is aimed at fully supporting the Arabic language in the Unix/Linux environment. It is designed to be a central location to standardize the Arabization process. Arabeyes relies on voluntary contributions.
Web interface for python math modules. Developed with web2py. It uses pure python modules for easy deployment . Math2py requires the mpmath library installed with web2py. Download and unzip mpmath in web2py/site-packages
Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.
CalPyLab is an open source data acquisition and (light) analysis software suite for scientific laboratories. The goal of this project is to provide a lightweight replacement for lab-view, to provide a quick and easy way to connect to your equipment.
The EMCD Utility Program is designed to process EELS spectra (filtering, shift/stretch on a common energy scale) in order to generate qualitative EMCD signal by substracting the spectra. See also:
PLAtypus's goal is to give people with poor communications skills an opportunity to learn and improve. With the guidance of a tutor, people will be able to learn new signs, sounds or icons and associate them with real life concepts that will, hopefully, help them to better express they needs.
PyExPsiN is a Python crossplatform (Linux/Windows) module for made easy writing psychological experiments. Right now includes functions for DMTS (Delayed Matching to Sample), N-Back, Spatial N-Back, "Grammatical", Mixed Dots, Stroop, and more.