1339 programs for "bio-bwa" with 1 filter applied:

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  • 1
    JHeatChart
    JHeatChart is a simple Java library for generating heat map charts.
    Downloads: 0 This Week
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  • 2
    HeliconiusDB is a project to develop a database schema and web-based software tools for the study of Heliconius butterflies (and other organisms) in evolutionary biology.
    Downloads: 0 This Week
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  • 3
    These classes are useful for signal processing in Matlab or C++. They bring together tools and methods which may be used interchangeably for Matlab and C++. Their initial use is in conjunction with work towards my degree at UC Berkeley.
    Downloads: 0 This Week
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  • 4
    This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.
    Downloads: 4 This Week
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  • 5
    PocketDepth helps determine binding grooves for protein molecules. Applicable in Bioinformatics and Drug discovery. Literature - http://www.ncbi.nlm.nih.gov/pubmed/17949996 Author's thesis - http://openwetware.org/wiki/Kalidas_Y
    Downloads: 3 This Week
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  • 6
    Cloe (Closure Editor) is a graphical, Java based tool used for editing contigs, resolving contig features, and closing both sequencing and physical gaps.
    Downloads: 0 This Week
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  • 7
    Ordered Bijective Interpolated Warping (OBI-Warp) aligns matrices using Dynamic Time Warping with a one-to-one (bijective) smooth warp-function. It is ideal for the chromatographic alignment of complex mass spectrometry proteomics data.
    Downloads: 0 This Week
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  • 8
    Open Source project for visualizing protein structure. Written in C++ with Qt and OpenGL the software is designed to be multi-platform (Linux, FreeBSD and Windows). On web: www.msprot.com Copyright 2008 Federal University of Sao Paulo - UNIFESP
    Downloads: 0 This Week
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  • 9
    Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)
    Downloads: 0 This Week
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  • 10
    Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.
    Downloads: 0 This Week
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  • 11
    clusterCons
    An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.
    Downloads: 0 This Week
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  • 12
    A tool to construct the metabolic networks from KEGG, and compare the constructed metabolic networks. Phylogenetic trees can be constructed along the case.
    Downloads: 0 This Week
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  • 13
    Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
    Downloads: 0 This Week
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  • 14
    JFlux is a java library and graphical user interface to work with flow cytometry data. In particular, it is adapted to the COPAS biosorter and can analyze expression profiles.
    Downloads: 0 This Week
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  • 15
    A comparative map and trait visualization framework enabling visual integration of genomic data from disparate data sources and allowing rich client-side interactivity and manipulation. Extensible through plugins for new datasources and algorithms.
    Downloads: 0 This Week
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  • 16
    A C++ Library for modelling and analyzing biochemical networks
    Downloads: 0 This Week
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  • 17
    A Collection of classes related to biological and bioinformatical topics.
    Downloads: 0 This Week
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  • 18
    Text2Genome is a set of scripts to extract nucleotide sequences from scientific articles and to map them to genomes and genes using a local alignment algorithm (BLAST/BLAT)
    Downloads: 0 This Week
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  • 19
    BigRedBin is a web-based tool designed to pre-process metabolomics data generated by a mass spectrometer in an attempt to increase the signal-to-noise ratio. This is accomplished by using information from multiple technical replicates.
    Downloads: 0 This Week
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  • 20
    The DNA Sequence Read Toolkit is a set of programs to convert data from DNA sequencing instruments into formats suitable for archiving, viewing or for onward processing (for example alignment or assembly).
    Downloads: 0 This Week
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  • 21
    FunctSNP is an R interface to an SQL database for linking single nucleotide polymorphisms (SNPs) to functional knowledge. FunctSNP should work on any OS on which R runs.
    Downloads: 0 This Week
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  • 22
    Basic Electronical Medical Management (BEMM) is an application to control medical data of a set of patients. It is built on top of open source technologies, to provide an integration skeleton of mvn, Datanucleus, Spring, Vaadin, Acceleo technologies.
    Downloads: 0 This Week
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  • 23
    simple-galib
    This library is a lightweight implementation of genetic algorithm, contains the most popular types of chromosomes and the basic algorithms for selection, elitism, crossing and mutation.
    Downloads: 0 This Week
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  • 24
    FusionMiner
    FusionMiner is a molecular biology program which accepts genomic alignments in BLAST/BLAT tabular output and attempts to find true fusion transcripts. A single command runs the pipeline and generates results.
    Downloads: 0 This Week
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  • 25
    Small set of utilities used by the 2010 iGEM Mexico-UNAM-CINVESTAV Team to automate biobricks from files
    Downloads: 0 This Week
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