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5 projects for "command line" with 2 filters applied:

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  • 1

    JGBParser

    jgbparser, gbk parser, genbank parser, bioinformatics

    We present an alternative library for development of bioinformatics Java applications. a Java implementation of JGBParser was built. It consists in a library, able to analyze text files in the GenBank Flatfile (GBF) format.
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  • 2
    EMBOSS Suite
    EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
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  • 3
    IU Batch Scripts are shell scripts that simplify the process of submitting batch jobs on Unix machines that use the PBS queueing system and on AIX machines that use LoadLeveler.
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  • 4
    Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
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  • 5
    ea-fold is a platform to perform protein folding simulations by means of evolutionary algorithms. The program implements a parallelized distributed evolutionary algorithms and a flexible force field.
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