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Processing and analysis of Small Angle X-ray Scattering (SAXS) data.
...It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis (EFA) or the regularized alternating least squares (REGALS) methods.
Active source code is now maintained on github:
https://github.com/jbhopkins/bioxtasraw
To install:
Check the instructions available at: http://bioxtas-raw.readthedocs.io/en/latest/install.html and in the Files tab.
User guides:
RAW guides are available at: http://bioxtas-raw.readthedocs.io/ and in the Files tab.
To contact us, see:
https://bioxtas-raw.readthedocs.io/en/latest/help.html
Enhanced splice junction detection and estimation from RNA-Seq data
...Multiple mapping reads with a unique location after filtering are rescued and reallocated to the most reliable candidate location.
FineSplice requires Python 2.x (>= 2.6) with the following modules installed: pysam (http://code.google.com/p/pysam/) and scikit-learn (http://scikit-learn.org/).
For further details check out our publication: Nucl. Acids Res. (2014) doi: 10.1093/nar/gku166