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  • 1

    srst

    Short Read Sequence Typing

    Update - SRST2 Now Available ------ 25 Sep, 2013 This project has now been replaced by SRST2 - Short Read Sequence Typing for Bacterial Pathogens, available at http://katholt.github.io/srst2/ The new SRST2 program does gene typing as well as MLST (e.g. typing resistance genes, virulence genes, etc). SRST2 is faster and more accurate than the old SRST, using bowtie2 to achieve local alignments (no need for flanking sequences) and a brand new scoring system.
    Downloads: 1 This Week
    Last Update:
    See Project
  • 2

    brocc

    BLAST Read and OTU Consensus Classifier

    NOW HOSTED ON GITHUB: https://github.com/kylebittinger/brocc Old releases are kept here for archival purposes.
    1 Review
    Downloads: 1 This Week
    Last Update:
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