Showing 258 open source projects for "linux windows"

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  • 1
    SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and share code that is common to many tasks and programs.
    Downloads: 0 This Week
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  • 2
    RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit against the evolutionary group that the HMM models, and it does this using through iterative database searches and incremental subsequent adaptation of the seed set.
    Downloads: 0 This Week
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  • 3
    A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
    Downloads: 0 This Week
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  • 4
    A set of bioinformatics tools for the open source bio-informatics platform "birch"
    Downloads: 0 This Week
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  • 5
    A python/C++ framework for Bayesian phylogenetic analysis.
    Downloads: 0 This Week
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  • 6
    A collection of python classes for computational ecology and evolutionary biology.
    Downloads: 0 This Week
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  • 7
    A univariate and multivariate analysis UI. This project is no longer under development. Please use as you wish.
    Downloads: 2 This Week
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  • 8
    Inter University Multi-Modal Imaging
    Downloads: 0 This Week
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  • 9
    BARNACLE
    BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
    Downloads: 0 This Week
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  • 10
    RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats. Radar has moved to github (https://github.com/AndreasHeger/radar)
    Downloads: 0 This Week
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  • 11
    A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.
    Downloads: 0 This Week
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  • 12
    FociCounter is a simple and user-friendly program for analysis of gamma-H2AX foci. It allows to determine the number of foci in a single cell, a foci intensity as well as a cell intensity.
    Downloads: 0 This Week
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  • 13
    Tandem mass spectral peptide identification and validation software, similar to X!Tandem, OMSSA, MyriMatch. Suitable for single hosts through large clusters. Written in Python for simplicity, with performance-critical sections in C++.
    Downloads: 0 This Week
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  • 14
    A collection of tools for use in gene naming, including standardization, selection, and comparison.
    Downloads: 0 This Week
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  • 15
    A GUI-based search tool that allows the exploration of the relationships between Metabolites.
    Downloads: 0 This Week
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  • 16
    Brian is a new simulator for spiking neural networks available on almost all platforms. The motivation for this project is that a simulator should not only save the time of processors, but also the time of scientists.
    Downloads: 0 This Week
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  • 17
    This Project moved to https://sourceforge.net/projects/synbiowave/ because the name GeneWave is a registered trademark... Please do not use this project anymore.
    Downloads: 0 This Week
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  • 18
    MIVF - Medical Imaging and Visualization Factory, is a framework for medical applications. It supplies a platform, in which image processing and 3D visualization algorithms can be employed as reusable components (functional modules or plugins).
    Downloads: 0 This Week
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  • 19
    go2Sim measures semantic similarity between genes annotated with Gene Ontology terms. Resnik and Wang methods supported. A new improvement of the methods is currently in development, it will be available as soon as the results have been published.
    Downloads: 0 This Week
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  • 20
    "Blue Planet" is a research project simulating the behaviour and darwinian evolution of unicellular lifeforms, each controlled by its own genetic program. Moreover, "Blue Planet Inhabitants" are suited for swarm intelligence and swarm research.
    Downloads: 0 This Week
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  • 21
    Pythia is a thermodynamically based PCR primer design program.
    Downloads: 0 This Week
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  • 22
    Integration of results from multiple homology searches
    Downloads: 0 This Week
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  • 23
    A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining
    Downloads: 0 This Week
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  • 24
    A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.
    Downloads: 0 This Week
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  • 25
    A web-based repository of plasmids and biobricks (see http://parts.mit.edu) plus related utility programs that support synthetic biology research. Note: This project is not updated any longer. A completely re-written and much better version of this web server can be found here: http://www.rotmic.org
    Downloads: 0 This Week
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