Showing 437 open source projects for "engineering"

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  • 1
    qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
    Downloads: 0 This Week
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  • 2
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  • 3
    CellPublisher is a free, open source program to improve the navigation of biological pathways. It converts CellDesigner diagrams into fully-featured maps that live inside a browser. The navigation is based on the Google maps API.
    Downloads: 0 This Week
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  • 4
    A collection of corpus and access routines for developing biological literature analysis systems.
    Downloads: 0 This Week
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  • 5
    SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and share code that is common to many tasks and programs.
    Downloads: 0 This Week
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  • 6
    RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit against the evolutionary group that the HMM models, and it does this using through iterative database searches and incremental subsequent adaptation of the seed set.
    Downloads: 0 This Week
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  • 7
    A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
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  • 8
    PowerTalk automatically speaks Microsoft PowerPoint presentations. For presenters who find speaking difficult, audiences containing people with visual impairments and fun educational uses. Uses synthesised computer speech provided with Windows
    Downloads: 32 This Week
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  • 9
    NeuraPy is now hosted on github This is a collection of Python modules that read files encountered in neuroscience experiments. Included are modules to read lablib files and modules to read Cyberkinetics Cerebus system .nev and .ns3 files
    Downloads: 0 This Week
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  • 10
    A python/C++ framework for Bayesian phylogenetic analysis.
    Downloads: 0 This Week
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  • 11
    A set of bioinformatics tools for the open source bio-informatics platform "birch"
    Downloads: 0 This Week
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  • 12
    At the outset, the goal of this program is to provide a suite of tools to aid in the back-translation of amino acid sequences in a manner that provides useful information for synthetic gene design.
    Downloads: 0 This Week
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  • 13
    SINAM -- Simulation Interface for Network Analysis of Metabolism
    Downloads: 0 This Week
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  • 14
    A collection of python classes for computational ecology and evolutionary biology.
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  • 15
    A univariate and multivariate analysis UI. This project is no longer under development. Please use as you wish.
    Downloads: 2 This Week
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  • 16
    The C Protein Folding Library is a minimalistic, high-performance modular library of C functions and data structures for computing folding simulations of proteins on a wide variety of computer hardware.
    Downloads: 0 This Week
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  • 17
    PTools
    PTools : a C++/Python library for macromolecular docking
    Downloads: 0 This Week
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  • 18
    Inter University Multi-Modal Imaging
    Downloads: 0 This Week
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  • 19
    DANGLE: A Bayesian inferential prediction method for protein backbone dihedral angles and secondary structure assignments, solely from sequence information, experimental chemical shifts and a database of known protein structures and their shifts.
    Downloads: 0 This Week
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  • 20
    BARNACLE
    BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
    Downloads: 0 This Week
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  • 21
    RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats. Radar has moved to github (https://github.com/AndreasHeger/radar)
    Downloads: 0 This Week
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  • 22
    EUtils is a python client-side library for querying the NCBI's Entrez life science databases through the NCBI eUtils web services.
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  • 23
    A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.
    Downloads: 0 This Week
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  • 24
    FociCounter is a simple and user-friendly program for analysis of gamma-H2AX foci. It allows to determine the number of foci in a single cell, a foci intensity as well as a cell intensity.
    Downloads: 0 This Week
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  • 25
    A web-based system for upoading, managing, sharing, and analyzing bioinformatic data. The system is primarily written in python, and runs on both linux and MacOs.
    Downloads: 0 This Week
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