Search Results for "mac framework"

The OpenGEREA is a open enrichment analysis framework for gene expression regulation data analysis.

Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other...

GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead...

A rule-based modelling framework for allosteric proteins and biochemical networks.

The HuRef Genome Browser is a Web resource for the navigation of an individual human genome, termed HuRef, published in PLoS Biology. The browser is a unified framework of annotation, assembly and synteny tools. It is online at http://huref.jcvi.org.