Showing 35 open source projects for "advanced strategic command"

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  • 1
    Peakplot is a Perl implemented freely available software application which labels peptide tandem mass spectra retrospectively after a Mascot database search. Availability: http://fgcz-peakplot.uzh.ch/
    Downloads: 0 This Week
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  • 2
    Phylogentic pipeline written in perl. Use svn to get the latest version. svn co https://bio-hal.svn.sourceforge.net/svnroot/bio-hal/trunk hal
    Downloads: 0 This Week
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  • 3
    Murasaki
    Whole-genome scale multiple genome local alignment search program. Supports unlimited length gapped-seed patterns, parallelization through distributed hashing, and unique a TF-IDF based repeat filtering method.
    Downloads: 0 This Week
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  • 4
    Neurospaces is a development center for tools in computational neuroscience. See http://www.neurospaces.org/
    Downloads: 0 This Week
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  • 5
    automatically design primers for allele-specific genomic or expression analysis based on Dr. Cory Valley's (Duke, Willard Lab) working protocol
    Downloads: 0 This Week
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  • 6
    MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
    Downloads: 0 This Week
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  • 7
    Biospha is a suite of perl scripts based on bioperl toolkit intended to help researches to manage large sequence file. With BIOSPHA you can classify each sequence according to the NCBI taxonomy. You also can get all taxonomic info from a GI or Taxid.
    Downloads: 0 This Week
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  • 8
    Autoprime

    Autoprime

    Automated primer design using EnsEMBL

    AutoPrime allows to rapidly design primers for real-time PCR measurement of eukaryotic expression. By connecting to the EnsEMBL database gene structure information is used to find primers spanning exon borders. This way only expressed sequences are captured. Additionally mispriming on repetitive regions can be avoided using information from RepBase.
    Downloads: 0 This Week
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  • 9
    mySQL db app that stores chemical structures, calc. descriptors and property values. It has a descriptor calculator and a method that filters descriptors correlated with property values. Easy to plug-in your descriptor calc. Ideal for QSAR specialists!
    Downloads: 0 This Week
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  • 10
    MyGCAT: My Genome Collection With Assigned Taxonomy provides for the management of extremely large sequence databases and allows for the creation of taxon specific BLAST databases. Primariliy a set of PERL scripts and a HTML interface to a MySQL database
    Downloads: 0 This Week
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