Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
OpenCV powered image stack analyser for data extraction and preparation.
Can be used in conjunction with nanocalcFX.
You can get sample data at the NISA homepage.
Currently in pre-alpha state.
Executable program that measures sizes and other properties of colonies arrayed in a grid format (intended for 768, 384, or 96 colonies on agar plates) from jpeg images
The Antigen Variability ANAlyzer (AVANA) tool uses information entropy to measure variability in protein sequence alignments. It also compares alignments using mutual information, identifying the mutations that characterize specific sequence sets.
MZ-Analyzer is a tool for visualization and analysing of multiple mass spectrometry data in 2D and 3D mode, including the function of quantitating the LC-peak of the specified identified peptides.
MAGMA: Multiobjective Analyzer for Genetic Marker Acquisition
A genetic algorithm for generating SNP tiling paths from a large SNP database
based on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks):
Hubley R., Zitzler
A straight-forward Java implementation of a mixture model with pluggable mixture functions, e.g. a mixture of Gaussian functions. The number and dimensionality of the mixture functions is not limited. All critical calculations are performed in log-space.