Showing 28 open source projects for "angularjs-eclipse"

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  • 1
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,...
    Downloads: 8 This Week
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  • 2
    OpenChrom
    ...The focus is to handle data files from different GC/MS and GC/FID systems and vendors. Its functionality and algorithms can be extended using a flexible plugin approach, based on Eclipse RCP.
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    Downloads: 7 This Week
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  • 3
    MSqBAT

    MSqBAT

    Label-free protein quantification for LC-MS

    MSqBAT is a freely-available all-platform software application for label-free quantification of proteins from LS-MS data. It was developed in the lab of Dr. Christoph Rösli at the Heidelberg Institude for Stem Cells and Experimental Medicine (HI-STEM) and the German Cancer Research Center (DKFZ). It’s main features are 1) Label-free, MS1-based quantification 2) Support both LC-MALDI-MS- as well as LC-ESI-MS data 3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data 4) Convenient,...
    Downloads: 0 This Week
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  • 4
    Maui

    Maui

    Maui is the Maltcms User Interface

    Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas.
    Downloads: 0 This Week
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  • 5
    An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
    Downloads: 4 This Week
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  • 6
    Maltcms
    The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
    Downloads: 0 This Week
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  • 7
    Software suite for cell modelling
    Downloads: 0 This Week
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  • 8

    ChemClipse 3rd Party Libraries

    ChemClipse Third Party Libraries

    The ChemClipse 3rd Party Libraries are plug-ins which encapsulate the functionality of other open-source projects to be usable through Eclipse/OSGi bundles within the ChemClipse Rich Client Platform (RCP).
    Downloads: 0 This Week
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  • 9
    SBSI
    SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.
    Downloads: 0 This Week
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  • 10

    DiSir

    In-silico digestion of proteins.

    Downloads: 0 This Week
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  • 11
    PepSir

    PepSir

    PepSir checks and filters for peptide proteotypicity.

    PepSir checks and filters for peptide proteotypicity.
    Downloads: 0 This Week
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  • 12
    Based on HL7 v.2.3.1 Orders & Results Reference Information Model (RIM)s, The project is NOT a CPOE per-se. Instead, the project provides "applications" that allow EHR's to perform Outpatient Orders and Results via HIE, and collect these into their EHRs to feed the EHR "CPOE module / section" (ex. with prescribed drugs, ordered labs and results, ....) The first module in the project was the "ePrescribing application"; certified by RxHub and SureScripts back in 2007. New...
    Downloads: 0 This Week
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  • 13
    An api for domain level interaction with SNOMED CT and an implementation based on a storage engine using a native SNOMED distribution stored in neo4j as a backend.
    Downloads: 0 This Week
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  • 14
    CellML-IDE
    An IDE for CellML 1.1 user models developed in UNSW as an open source project. Author: Mitchell Lanesbury 2012
    Downloads: 0 This Week
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  • 15
    SemaRule Navigator
    SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.
    Downloads: 0 This Week
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  • 16
    Subnetwork Analysis Plugin for BiNA
    The plugin allows automatic highlighting of pathways in an easy and understandable manner.
    Downloads: 0 This Week
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  • 17
    Knime (http://www.knime.org) nodes for sequence bioinformatics. Sequime is an eclipse plug-in for the KNIME data mining platform, providing additional nodes for reading, processing and visualizing sequence information.
    Downloads: 0 This Week
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  • 18
    Anna is lightweight Java framework to build pipeline systems of any kind. It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
    Downloads: 0 This Week
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  • 19
    The Edinburgh Pathway Editor (EPE) is a tool and framework that allows the drawing and manipulation of Biological Networks, such as signalling or matabolic pathways. The editor supports several notations including SBGN and Cytoscape notations.
    Downloads: 0 This Week
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  • 20
    URBAN – a Unified Rule-Based and Allosteric Network compiler and simulator for quantitative modelling in systems and synthetic biology
    Downloads: 0 This Week
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  • 21
    PubCurator is a biomedical text mining platform and validation helper built on top of Eclipse RCP.
    Downloads: 0 This Week
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  • 22
    D-finder is a bioinformatic search algorithm for the identification of D-sites in JNK interacting proteins. The algorithm is a combination of pattern matching and a hidden markov model (HMM) based on a training set of known JNK D-sites.
    Downloads: 0 This Week
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  • 23
    AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna.
    Downloads: 0 This Week
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  • 24
    The Shrimp suite provides interactive visualizations of graph-based data. Creole (Eclipse plug-in) visualizes Java source code. Jambalaya (Protege plug-in) visualizes ontologies (including OWL), & Stand-Alone Shrimp visualizes RSF/GXL/PRJ/PPRJ files.
    Downloads: 3 This Week
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  • 25
    A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
    Downloads: 0 This Week
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