Showing 5 open source projects for "threading"

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  • 1

    skewer

    A fast and sensitive adapter trimmer for illumina paired-end sequences

    This program implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences.
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    Downloads: 79 This Week
    Last Update:
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  • 2
    olego

    olego

    OLego – short or long RNA-seq read mapping to discover exon junction

    ...It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data.
    Downloads: 2 This Week
    Last Update:
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  • 3
    flNeuronTool

    flNeuronTool

    A Fast Light Neuron Tracing and Editor Tool

    The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images.
    Downloads: 0 This Week
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  • 4
    An open source implementation of a protein threading program based on the energy functions and techniques originally introduced by Prospect.
    Downloads: 0 This Week
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  • 5
    Bio::Prospect:: is a Perl API to the PROSPECT threading application. The modules provide for program execution, results parsing, multiple sequence alignments inferred from pairwise sequence-structure alignments, and rudimentary homology models.
    Downloads: 0 This Week
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