Individual-based forward-time genetics simulation software
Growth-grammar related Interactive Modelling Platform
PySCeS Constraint Based Modelling
Biomolecular electrostatics software
Neurons to Algorithms - A neural modeling and simulation workbench
Proteomics software for simulation of spectra of phosphopeptides
Growing suite of proteomics simulations for educational purposes
Accurate and efficient Java library that simulates biological models
Multiscale Neuroscience and Systems Biology Simulator
A software package for estimating generalized ensemble weights in Mark
Rejection-based stochastic simulation algorithm (RSSA)
Glycosylation Network Analysis Toolbox (GNAT)