Search Results for "physics simulation"

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Showing 11 open source projects for "physics simulation"

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  • 1
    PhysiCell

    PhysiCell

    physics-based multicellular simulator

    PhysiCell is a cross-platform C++ framework for large, physics-based multicellular simulations.
    Downloads: 19 This Week
    Last Update:
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  • 2
    Gwyddion

    Gwyddion

    Scanning probe microscopy data visualisation and analysis

    A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.
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    13 Reviews
    Downloads: 1,588 This Week
    Last Update:
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  • 3
    APBS

    APBS

    Biomolecular electrostatics software

    This software has moved to http://www.poissonboltzmann.org/.
    15 Reviews
    Downloads: 0 This Week
    Last Update:
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  • 4

    Muninn

    A software package for estimating generalized ensemble weights in Mark

    We have moved to GitHub: https://github.com/muninnorg/muninn As of July 2015 we have moved to GitHub. The SourceForge page will preserved, with the old releases. Muninn is a software package for estimating generalized ensemble weights in Markov chain Monte Carlo (MCMC) simulations. The method is full automated and makes use of the generalized multihistogram (GMH) equations for estimation the density of states [1]. The package is implemented in C++ and has a convenient interface.
    Downloads: 0 This Week
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  • 5

    RaTrav

    mean first passage times and node occupancies calculations

    RaTrav tool was designed to support computational biology studies where mean first-passage times (MFPTs) between initial and single or multiple final states in network-like systems are used. The tool approves arbitrary networks (graphs) where a dynamics of the Markovian type takes place. Two methods are made available for which their efficiency is strongly dependent on the topology of the defined network: the combinatorial Hill technique and the Monte Carlo simulation...
    1 Review
    Downloads: 0 This Week
    Last Update:
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  • 6
    Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
    Downloads: 0 This Week
    Last Update:
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  • 7
    (AB)² Simulation

    (AB)² Simulation

    Simulation for Physics / Bilogics Systems

    Supports flow Simulation for Physics and Meso-Compartimental Simulations for Biological Systems. Uses a Container-Flow based System.
    Downloads: 0 This Week
    Last Update:
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  • 8
    Mito-MAS-m is a simulator of the mitochondrial inner membrane and the enzymatic complexes embedded in it, implementing a coarse-grained (CG) model of the molecules using rigid structures and Dissipative Particules Dynamics (DPD) as motion equation.
    Downloads: 0 This Week
    Last Update:
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  • 9
    Cellular Automata simulator. Native code (fast) and modular design: update rule, topology, time, measurement, initialization are independant. No GUI (for now...): configuration file (commented default automatically generated) overridable by command line.
    Downloads: 0 This Week
    Last Update:
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  • 10
    runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and conditions.
    Downloads: 0 This Week
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  • 11
    Basic life is an application that desires to simulate basic life based on some basic chemistry/physics rules. This environment provides particles that can bond, vibrate, react, etc. in order to create basic cells
    Downloads: 0 This Week
    Last Update:
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