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Swift Sequence Alignment Program

GPU-based DNA sequence alignment program using Smith-Waterman

Swift is a DNA sequence alignment program that produces gapped alignment using the Smith-Waterman algorithm. It takes in a query file (FASTA format) and a reference file (FASTA format) as input. It outputs the reference name, read name, gapped alignment, alignment score, alignment start and end positions, and alignment length. I gave a talk on Swift in the GPU Technology Conference 2012. The talk can be accessed at...

Downloads: 0 This Week

Last Update: 2015-09-01
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