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flexible barcode and adapter removal for sequencing platforms
...Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform.
Reference:
Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for next-generation sequencing platforms. Biology 2012, 1(3):895-905.
mPUMA: microbial Profiling Using Metagenomic Assembly
This is a software package which was designed to allow researchers to profile microbial communities using a de novo assembly approach to form Operational Taxonomic Units (OTUs). While originally designed to support the analysis of cpn60 based amplicons, mPUMA can be used to analyze data from any suitable DNA barcode.
A manuscript describing mPUMA is currently being developed and will be submitted for peer review presently.
If you are interested in using mPUMA pre-publication please contact the project admin(s) with any questions.
OpenVista(R) is the open-source version of VistA, an enterprise grade health care information system developed by the U.S. Veterans Affairs and deployed at 1,500 global facilities. OpenVista is a registered trademark of Medsphere Systems Corporation
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