Rana, Restriction Analysis Libraries.
Rana is written in Python and provides a set of libraries and scripts to work with restriction enzymes and ADN. The aim is to ease the development of molecular biology software for research or education purposes.
FM100 is a computer simulation of the Farnsworth-Munsel 100 hue colour (color) vision test. The results of the test can be used to assess the user's colour vision.
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Java/XML toolkit for research using Bayesian networks and other graphical models of probability (exact and approximate inference, structure learning, etc.)
Clouseau is an Open Source Bioinformatics suite. It's goal is to make analyzing and representing DNA as easy as possible. It's primary target is x86/Linux, but should be easily portable to any Linux/*nix-based OS.
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fsap is a bundle of R packages that implements several models and processes used in Fisheries Science. The main purpose is to allow a Fisheries Scientist or Student to do a full stock assessment within the R environment.
Simulare is a simulation engine and application built on java. At first it'll simulate an aquarium but planned to evolve latter. One objective is a simple UI so everybody can use it. Imagine a fish farmer optimizing his production with this software! ;)
openevo is a project started to find out about behaviour of evolutionary generated machine code. It implements a certain set of CPU instruction codes and a few interrupts for interaction with the runtime environment.
EcoloSim is a Simulation Framework for simple spatial models in biology and ecology, in Java.
Typical problems are behavior of a herd of cattle, growth of microbe cells and other populations.
STARS is an alternative interface to staden for studying polymorphisms in short sequences with batch processing, manual editing, trace viewing and data management. STARS was initially designed for Multi Locus Sequence Typing of bacteria.
An application for modelling species distribution and preparing and retrieving locality,climatic and other data for use in species distribution models.
The Java Batch System (JBS) is a batch queueing system in the
tradition of NQS and PBS for internal (Java-based) and system batch
jobs. Stand-alone operation and integration with existing batch
queueing systems, initially OpenPBS, is supported.