Search Results for "open source assembly software source code" - Page 21
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Showing 613 open source projects for "open source assembly software source code"
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A C++ library for Bayesian computation, including a collection of more generally-applicable utilities.
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The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in structural biology to facilitate the development of molecular modeling, design and analysis tools.
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PRIDE: PRoteomics IDEntifications database. Please note that the PRIDE project has relocated to http://code.google.com/p/ebi-pride
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3D cellular automata modelling software for large general purpose simulations. Uses custom scripts for rules and can distribute processing over several machines.
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ParticleStats is software for analysing tracked particles from RNA Localization experiments. Analysis is performed on the X and Y coordinated of the tracked RNA particles
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The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.
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Chemical Evaluation Framework (CEF) is a molecular structure based software to assist in hazard assessment. Download requires Java 6 update 1. Source code is contained in jar files. Download contains GSH reactivity plugin.
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This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results
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Latronix Regnum Arts - Open Source Faction is an open source and freeware developer for all sorts of goodies. Be it games or applications. This is the home for the Drug Turfs Game (A Drug Wars like game) and the Drug Turfs Library.
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FORce based Cluster Editing (FORCE) is a Java software heuristically solving the graph cluster editing problem on weighted edges using BLAST E-values. It further provides a training mode for heuristic parameter estimation.
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Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.
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Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
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Fast-DCM (Fast-DynamicCausalModelling) is an open-source addon for the SPM5 toolbox (http://www.fil.ion.ucl.ac.uk/spm/software/spm5/). It accelerates the estimation of Dynamic Causal Models.
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GEDAS is a software to perform microarray data analysis with friendly user interface and convenient data display. Currently some commonly used data clustering algorithms have been implemented in this software.
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Sehr Gut Libs (sglibs) is a set of utility libraries for general and scientific programming. It includes stack and string manipulation, CGI I/O, config file parsing, and sequence-processing for molecular biology.
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Sourcer-E is a software for use in Genectic Biology research. Starting from the information collected by the field researcher about on the species contact zone it calculates the center and the width of the hybird zone.
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Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.
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Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Life Science applications, and server software, for Industry data providers.
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Narrator is a graphical modelling tool for the description of dynamical systems and processes. Narrator is SBML compatible.
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This software system serves as both a DICOM image viewer as well as a diagramming tool for collaborating notes on the given image sets. This my Computer Science graduate thesis project at Loyola Marymount University.
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RepeatFinder is a command line tool for generating non-overlapping matches of microsatellite DNA from FASTA format code.
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PHLIP is a MATLAB centric academic software application for quantification of biofilm structure from confocal laser scanning microscopy (CLSM) data, intended for automated processing and statistical analysis of large data sets produced by CLSM.