Showing 804 open source projects for "java"

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  • 1
    FAS-DPD
    FAS-DPD is a program to design degenerate primers for PCR.
    Downloads: 0 This Week
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  • 2
    Contextor
    Contextor is a light-weight simple-to-use Java based library to help developers and researchers working with the general concept of a resource; as examples, resources can be text resources, web resources, images and videos.
    Downloads: 0 This Week
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  • 3
    The BioSimz project aims to deliver a library (as well as the interface) to conduct large-scale biomolecular simulations at their atomic scales of detail. The initiative idea is to observe the protein crowding in vivo; it now can do much more than that!
    Downloads: 0 This Week
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  • 4
    TreeViewJ is a Java tool for visualizing, editing and analyzing phylogenetic trees. The software allows researchers to color and change the width of branches, and add names to nodes. Collection dates can be mapped onto a timeline, and sorted.
    Downloads: 1 This Week
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  • 5
    BorderFlow
    BorderFlow implements a general-purpose graph clustering algorithm. It maximizes the inner to outer flow ratio from the border of each cluster to the rest of the graph.
    Downloads: 0 This Week
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  • 6
    MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
    Downloads: 0 This Week
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  • 7
    A map/reduce based application for mapping short reads generated by the next-generation sequencing machines.
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  • 8
    EMBOSS Suite
    EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
    Downloads: 0 This Week
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  • 9
    Anna is lightweight Java framework to build pipeline systems of any kind. It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
    Downloads: 0 This Week
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  • 10
    Trial Criteria Online Data Entry (trialCODE): a Java-based user interface that codifies eligibility requirements used to automate the screening of potential subjects to clinical trials. Used for caMATCH screening engine on BreastCancerTrials.org site.
    Downloads: 0 This Week
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  • 11
    Client tools for the FuncNet protein function analysis platform: http://funcnet.eu/
    Downloads: 0 This Week
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  • 12
    a Java library designed to manage genotype and clinical data underlying complex diseases
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  • 13
    DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).
    Downloads: 0 This Week
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  • 14
    This project has moved to http://code.google.com/p/synthetic/
    Downloads: 0 This Week
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  • 15
    A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
    Downloads: 0 This Week
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  • 16
    Musite
    Musite provides a bioinformatics tool for predicting both general and kinase-specific protein phosphorylation sites.
    Downloads: 0 This Week
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  • 17
    OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.
    Downloads: 0 This Week
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  • 18
    GEM is a computational method for identification of transcription factor modulators, using expression datasets. The method tests if the correlation between factor and target gene depends on the expression of the modulator.
    Downloads: 0 This Week
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  • 19
    The purpose of this project is to develop ontology-based tools for the study of animal behavior (ethology). The goal is not to produce a general ontology or editor, but comparative methods and (behavior) data entry tools (ethontos and owlwatcher).
    Downloads: 0 This Week
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  • 20
    The development and curation of a range of XML-based tools for using Chemical Markup Language (CML), including XSD XML Schemas for validation, datatyping and constraining CML documents and XSLT Stylesheets for transforming, filtering and rendering.
    Downloads: 1 This Week
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  • 21
    A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
    Downloads: 0 This Week
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  • 22
    A set of bioinformatics tools for the open source bio-informatics platform "birch"
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  • 23
    URBAN – a Unified Rule-Based and Allosteric Network compiler and simulator for quantitative modelling in systems and synthetic biology
    Downloads: 0 This Week
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  • 24
    molecular simulation program for anisotropic particle shape and potential
    Downloads: 0 This Week
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  • 25
    PubCurator is a biomedical text mining platform and validation helper built on top of Eclipse RCP.
    Downloads: 0 This Week
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