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Showing 4 open source projects for "umbrella-cli"

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  • 1
    obo An umbrella organization for ontologies and structured shared controlled vocabularies for use across all biological and biomedical domains
    12 Reviews
    Downloads: 2 This Week
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  • 2
    KAnalyze

    KAnalyze

    DNA/RNA Sequence K-mer Toolkit

    KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API.
    Downloads: 5 This Week
    Last Update:
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  • 3

    Protein Contact Matrix Generator

    Command line application to generate contact matrix from proteins (3D)

    A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand...
    Downloads: 0 This Week
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  • 4
    Frigg is an umbrella for all public GenomeView support tools
    Downloads: 0 This Week
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