Showing 75 open source projects for "mod-apache-snmp"

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  • 1
    Ferox

    Ferox

    Ferox - Sequence Alignment with Fuzzy K-mers

    Ferox is a DNA sequence alignment application that uses fuzzy k-mers to quickly and accurately align sets of sequence reads against a reference genome. Ferox can also be used to align whole genomes. The seeding mechanism used by Ferox is highly configurable, allowing custom fuzzy seeds to be created declaratively in an XML configuration file.
    Downloads: 0 This Week
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  • 2

    locsmoc

    piecewise polynomial curves for genomic signals

    Locsmoc produces piecewise polynomial models for one-dimensional signals of the type encountered in genomics. The project wiki contains an overview of the tool and usage examples.
    Downloads: 0 This Week
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  • 3
    SemaRule Navigator
    SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.
    Downloads: 0 This Week
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  • 4
    Data curation tool to maintain variables for the National Survey of Health and Development managed by the Lifelong Health and Ageing Unit of the Medical Research Council.
    Downloads: 0 This Week
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  • 5
    VELMA stands for Visualization & Exploration of Large Multiple sequence Alignments. VELMA is a Java tool for visualizing alignments of large numbers of biological sequences that exceed the capabilities of existing software.
    Downloads: 0 This Week
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  • 6
    Soaplab is a generator of Web Services providing a programmatic access to command-line (and other) applications on remote computers (an example of its usage is available at http://www.ebi.ac.uk/soaplab/)
    Downloads: 0 This Week
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  • 7

    clinicalStudyTracker

    Clinical study tracker tracks case study members through activities.

    Developed at Medical Research Council UK to meet a common clinical trial need to track various types of clinical data. Users log dates of completed tasks against participant ID. Simple, useable, reduces lost data! Makes graphical progress reports.
    Downloads: 1 This Week
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  • 8
    A wrapper for Apache UIMA (http://incubator.apache.org/uima/) that connects to the Open Biomedical Annotator (OBA) rest service from the National Center for Biomedical Ontology (http://www.bioontology.org/wiki/index.php/Annotator_User_Guide).
    Downloads: 0 This Week
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  • 9
    Reference compression tools for sequence read data.
    Downloads: 0 This Week
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  • 10
    Corra [BMC Bioinformatics 2008] is a computational framework & tools for discovery proteomics using label free LC-MS and ATAQS [BMC Bioinformatics 2011] is a computational framework & tools for validation proteomics using SRM LC-MS method.
    Downloads: 0 This Week
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  • 11
    GenoGUARD is a DNA sequence screening software that implements the best match method recommended by the federal government to detect the presence of biosecurity threats in synthetic DNA orders.
    Downloads: 0 This Week
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  • 12
    Contextor
    Contextor is a light-weight simple-to-use Java based library to help developers and researchers working with the general concept of a resource; as examples, resources can be text resources, web resources, images and videos.
    Downloads: 0 This Week
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  • 13
    TreeViewJ is a Java tool for visualizing, editing and analyzing phylogenetic trees. The software allows researchers to color and change the width of branches, and add names to nodes. Collection dates can be mapped onto a timeline, and sorted.
    Downloads: 0 This Week
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  • 14
    Anna is lightweight Java framework to build pipeline systems of any kind. It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
    Downloads: 0 This Week
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  • 15
    The Edinburgh Pathway Editor (EPE) is a tool and framework that allows the drawing and manipulation of Biological Networks, such as signalling or matabolic pathways. The editor supports several notations including SBGN and Cytoscape notations.
    Downloads: 0 This Week
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  • 16
    Memomics Forge is a meta-project for software that utilizes the Memomics Semantic Service. Memomics Semantic Service provides semantic data which can be embedded in applications via webservices.
    Downloads: 0 This Week
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  • 17
    h2:www is an easily extendable online interface for bioinformatical command-line tools, providing convenient project-oriented working facilities for multiple users.
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  • 18
    A wrapper that makes the UMLS MetaMap tool (http://mmtx.nlm.nih.gov/) available as an UIMA analysis engine.
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  • 19
    Care4G is a web-based software, as forking of the most famous care2x, it will be a complete HIS for the II Millennium...
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  • 20
    UCLA LONI Pipeline Globus Plugin
    Repository for the UCLA Laboratory of Neuro Imaging (LONI) Pipeline Globus Plugin Development
    Downloads: 0 This Week
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  • 21
    Taverna 1.x (archived)

    Taverna 1.x (archived)

    Scientific workflow system

    Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases. See https://taverna.apache.org/download/ for the latest releases from Apache Taverna.
    Downloads: 8 This Week
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  • 22
    AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna.
    Downloads: 0 This Week
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  • 23
    Extension of the DAS server MyDAS to support writeback capabilities.
    Downloads: 0 This Week
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  • 24
    The Antigen Variability ANAlyzer (AVANA) tool uses information entropy to measure variability in protein sequence alignments. It also compares alignments using mutual information, identifying the mutations that characterize specific sequence sets.
    Downloads: 0 This Week
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  • 25
    The MML Framework is a temporal-spatial biological model representation language. The MML Project provides the application tool set which facilitates the goals of representing biological models using the MML specifications.
    Downloads: 0 This Week
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