Showing 360 open source projects for "java class"

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  • 1
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 0 This Week
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  • 2
    FORce based Cluster Editing (FORCE) is a Java software heuristically solving the graph cluster editing problem on weighted edges using BLAST E-values. It further provides a training mode for heuristic parameter estimation.
    Downloads: 0 This Week
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  • 3

    Vascular Network Toolkit for ImageJ

    A plugin for segmentation and analysis of images of vascular networks.

    A plugin package for ImageJ that assists with quantification and characterization of vascular networks. The tool regularizes lighting, segments the vessels, and generates a skeletal description that reflects the biological structures of interest.
    Downloads: 0 This Week
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  • 4
    TIRfinder: A tool for mining class II transposons
    Downloads: 0 This Week
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  • 5
    Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
    Downloads: 0 This Week
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  • 6
    BioDOM is a JAVA library for easy creation of XML files according to simple XML schemas for describing biological data. It can also be used to convert other commonly used biological (possibly non-)XML data into these new formats.
    Downloads: 0 This Week
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  • 7
    MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.
    Downloads: 0 This Week
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  • 8
    TaxonDNA is a simple but extensible system for performing simple DNA (and other) sequence manipulations in Java. We hope to create a simple framework which can be quickly extended to create bioinformatics applications.
    Downloads: 1 This Week
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  • 9
    PROMPT is a system for retrieval, analysis, mapping and comparison of proteins. It allows easy mapping of different types of sequence IDs, data retrieval and integration, a multitude of analysis and comparison algorithms and a full-blown easy to use GUI.
    Downloads: 0 This Week
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  • 10
    Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Life Science applications, and server software, for Industry data providers.
    Downloads: 0 This Week
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  • 11
    Narrator is a graphical modelling tool for the description of dynamical systems and processes. Narrator is SBML compatible.
    Downloads: 0 This Week
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  • 12
    This software system serves as both a DICOM image viewer as well as a diagramming tool for collaborating notes on the given image sets. This my Computer Science graduate thesis project at Loyola Marymount University.
    Downloads: 0 This Week
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  • 13
    Structure is a framework for two-dimensional molecular visualization written in Java and based on Octet.
    Downloads: 0 This Week
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  • 14
    GridSweeper makes it easy to perform batch runs of scientific simulation programs on computational grids/distributed resource management systems.
    Downloads: 0 This Week
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  • 15
    Simulator of virtual animals made up of biological neural networks for research in the Computational Neuroscience field.
    Downloads: 0 This Week
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  • 16
    TRANSFOG DAS (Translational and Functional Onco-Genomics Distributed Annotation System) is an XML-based annotation system to allow the discovery and analysis of candidate genes potentially involved in cancer onset and progression.
    Downloads: 0 This Week
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  • 17
    Manuelito is a Java tool for decrypting posttranslational modification (PTM) patterns of proteins based on MALDI mass spectrometry spectra. It was built for analysing the 'histone code' but it can be applied to any other highly modified protein.
    Downloads: 0 This Week
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  • 18
    COB editor is a collaborative editor for biological ontology (e.g., Gene Ontology) building. Building on the idea of modular ontology from KR research, it supports multiple people to work on the same ontology.
    Downloads: 0 This Week
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  • 19
    Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
    Downloads: 0 This Week
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  • 20
    BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
    Downloads: 0 This Week
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  • 21
    VitaPad is an application used to visualize biological pathways and map experimental data to them
    Downloads: 0 This Week
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  • 22
    Dogwood is an ontology-aware Distributed Annotation System (DAS) server framework for the integration of biological, biomedical and clinical data.
    Downloads: 0 This Week
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  • 23
    OpenEMS™ is the multi platform Grid framework to seamlessly aggregate all your multi platform resources into a virtual super computer.
    Downloads: 0 This Week
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  • 24
    A neuroscientific knowledge management system for the published literature
    Downloads: 0 This Week
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  • 25
    Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program. It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user written MAEPlugins, documentation, tutorials, demo data.
    Downloads: 0 This Week
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