Search Results for "dicom plugin imagej"
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Showing 31 open source projects for "dicom plugin imagej"
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TomoJ
ImageJ plugin to perform Electron Tomography
TomoJ is an ImageJ plug-in for tomographic reconstruction. It was designed for electron tomography, however any acquisition with parallel beam should work. TomoJ proposes the preprocessing and the registration of tilt-series prior to 3D reconstructions (WBP, ART, SIRT, OS-SART, compressed sensing). TomoJ is written in Java, the computations are multithreaded and reconstruction can be performed on CPU or GPU (OpenCL). registration is described in: Journal of Structural Biology: X. 2020... -
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DocWire SDK
Award-winning modern data processing in C++17/20
DocWire SDK, a standout C++17/20 data processing tool, has received award from SourceForge and strong backing from Microsoft. It handles nearly 100 file types, empowering efficient text extraction, web data extraction, and document analysis. The upcoming integration of C++17 and C++20 will bring advanced functionalities, particularly in areas like HTTP capabilities and web data extraction. For businesses, the shift to DocWire SDK signifies a leap forward. It promises comprehensive document... -
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SEM3De
ImageJ plugin to enhance stack of images acquired by SEM
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ViralPlaque
A fast, open-source and versatile ImageJ macro for the automated dete
Plaque assay has been used for a long time to determine infectious titers. We present ViralPlaque, a fast, open-source and versatile ImageJ macro for the automated determination of viral plaque dimensions from digital images. Also, a machine learning plugin is integrated in the analysis algorithm for adaptation of ViralPlaque to the user’s needs and experimental conditions. A high correlation between manual and automated measurements of plaque dimensions was demonstrated. This macro... -
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SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
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Undistorter
Lens radial distortion correction - ImageJ plugin
This ImageJ plugin uses the division model proposed by Bukhari, F.; Dailey, M. N. (2013) to undistort images. The user can manually set the parameters k1, k2, and k3. The user can also draw segmented lines. After, by clicking on the Optimize button, the software will attempt to undistort the image transforming the segmented lines into straight lines. -
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CognitionMaster
object-based image analysis framework
Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34 -
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SMlocalizer
CUDA based ImageJ plugin for single molecule localization microscopy
SMLocalizer is a CUDA enabled ImageJ plugin for single molecule localization microscopy. The plugin aims to be a user friendly and powerful alternative to currently availible softwares where most settings are iteratively obtained by the software, not the user. The current version handles 3D multichannel data in any format that can be loaded into ImageJ/ Fiji. 3D modalities supported are PRILM, Biplane, Double helix and astigmatism. -
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NRRD Image Library for C++
Header Only C++ Library to read and write NRRD image files
... strings to C-type equivalent i.e. "uint8" to "unsigned char" - Always writes "endian" tag (required for FIJI/ImageJ loading) - Can open files of Big and little endian but saves files only in native format. It is compatible with ImageJ/Fiji http://fiji.sc/Fiji The library has been used in dozens of projects and is well tested. -
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clockscan
It is the Project for develop an ImageJ plugin
This plugin is used to measure the intensity of the brightness of the image of the radial scan profiles in the region of interest (ROI). Install the latest versions of bundled Java and either ImageJ or Fiji ImageJ as recommended on the respective websites, https://imagej.nih.gov/ij/ and https://fiji.sc/. In the text below, both programs will be referred to as “ImageJ”. Copy “Clock_Scan-1.0.1.jar” and “Multi_Clock_Scan-1.0.1.jar” or "Clock_Scan_combined-1.0.1.jar" and paste them... -
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SmartRoot
Semi-automated root image analysis software
... to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. To cite us: Guillaume Lobet, Loïc Pagès and Xavier Draye. A Novel Image Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture. 2011 Plant Physiology, Vol. 157 -
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Cell Sampler
Cell Sampling Plugin for ImageJ
Cell-Sampler is an ImageJ sampling plugin written in Java. It is designed to extract time series from microscopy images of oscillating cells expressing the GFP or Luciferase reporter molecule. This program was developed in the Piggin's Laboratory at the University of Manchester. Go to the Cell-Sampler Web Site for installation instructions and tutorial materials. -
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iSBatch
Hyearchical Data Processing Plugin for ImageJ
iSBatch is a Java-based plugin for ImageJ (version 1.49d) or its distribution Fiji. iSBatch is designed for quick evaluation of analysis pipelines and visual exploration of datasets. It is distributed under an open open-source license (GNU General Public License, version 3). The plugin handles the data in a hierarchical fashion based on a source folder containing all data and little guidance provided by the user. The software is designed for rapid exploration of large datasets... -
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openDICOM.NET - DICOM library, console tools, DICOM viewer/browser for Mono/.NET and Beagle Desktop Search Plugin. The project supports ACR-NEMA and DICOM file formats and provides transcoding to XML. It is written in C# and licensed under (L)GPL.
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The IJBlob library indentifying connected components in binary images. The algorithm used for connected component labeling is: Chang, F. (2004). A linear-time component-labeling algorithm using contour tracing technique. Computer Vision and Image Understanding, 93(2), 206–220. doi:10.1016/j.cviu.2003.09.002 The ImageJ *Shape Filter Plugin* (see downloads) uses this library for flitering the blobs by its shape. If you are using IJBlob in a scientific publication, please cite...
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IHC Profiler
A plugin for the quantitative analysis of Immunohistochemistry samples
...-x- Full Publication and Citation: Varghese F, Bukhari AB, Malhotra R, De A (2014) IHC Profiler: An Open Source Plugin for the Quantitative Evaluation and Automated Scoring of Immunohistochemistry Images of Human Tissue Samples. PLoS ONE 9(5): e96801. doi:10.1371/journal.pone.0096801 Link: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0096801 -x-x-x-x-x-x-x- Your feedback would be highly appreciated. Please rate so we can work on improving it further. Thank you! -
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Parallel HRRT Deconvolution is a multithreaded ImageJ plugin for motion correction of PET brain images.
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Parallel Super-Resolution is a multithreaded ImageJ plugin for super-resolution. Super-resolution is an image fusion and reconstruction problem, where an improved resolution image is obtained from several geometrically warped, low resolution images.
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Fourier Visualization
Fourier transform visualization using ImageJ
ImageJ Plugin for Fourier Transform visualization. Drawing sine and cose signals with different angles and frequencies to show how fourier transform behave. A video file animation can be created based on the images created by the plugin. -
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ClearCanvas
Open source DICOM and RIS/PACS informatics platform
Open source code base for enabling software innovation in imaging. The extensible and robust platform includes viewing, archiving, management, workflow and distribution of images as well as an open architecture for core competency tool development. -
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MediCom es un sistema de Telemedicina stand-alone que provee servicios de comunicación para médicos especialistas y de igual forma, proporciona visualización e interacción sobre imágenes médicas de formato DICOM, entre otros.
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VoltIJ (for VOLume viewing Tools for ImageJ) is a plugin for ImageJ allowing the 3D visualization of volumetric scalar data.
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Server-client apps that can access DCM4CHEE Dicom images using WADO. The client has an image viewer that is capable of render 2D, 3D and MPR images from DICOM datasets. Based on DCM4CHE and ImageJ. Download Turyon Client and Server (View all files)