Showing 12 open source projects for "mp.3"

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  • 1

    CusVarDB

    CusVarDB generated variant protein database from NGS-datasets

    CusVarDB is a windows based tool for creating a variant protein database from Next-generation sequencing datasets. The program supports variant calling for Genome, RNA-Seq and ExomeSeq datasets. The program performs mainly 4 modules 1. Align the datasets with reference database 2. Perform the variant calling using Genome Analysis Toolkit (GATK) 3. Annotate the variant using ANNOVAR 4. Create the variant protein database Apart from the main modules, the program also supports...
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  • 2
    ShuffleFastaSeq

    ShuffleFastaSeq

    This application can be used to shuffle sequences in FASTA format.

    ... can be set; by default n is 100. The output file contains n shuffled copies in FASTA format for each input sequence. For example (n=3): Input file: >a ACGGT >b GCCCATTC Output file: >a TCGAG >a CGAGT >a TGCGA >b CACTCCGT >b CCCGTATC >b CCTTCAGC
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  • 3
    Writing parameter sets for mutant models coded in BlenX is a tedious procedure that involves the mechanical (and error-prone) process of dealing with textual files. GeMPS offers a GUI that simplifies the generation of combined parameter sets.
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  • 4
    Motion tracking software to be used in conjunction with a wiimote. Aimed at researchers.
    Downloads: 0 This Week
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  • 5
    Ethovision Paste Track
    The goal of EPT is to get track representations from the clipboard (put there by Ethovision) and to automatically save the serie of images while incrementing a value in their filename.
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  • 6
    Ethovision Missing Samples
    The goal of Ethovision Missing Samples (EMS) is to parse exported tracks from Ethovision and to report the number of missed samples in one track.
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  • 7
    Analyzes water molecules in the protein data bank file to look for polygonal water structures by looking for H-bond connections. GUI with automatic statistics, and PDB polygon drawer for viewing in Coot (Separate x-ray modelling software) included.
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  • 8
    .Net based tools for AnIML formatted data files
    Downloads: 1 This Week
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  • 9
    BRISC (BRISC Really IS Cool) is 1) a library for Haralick, Gabor and Markov image feature extraction from pulmonary nodule DICOM images and 2) a simple content-based image retrieval (CBIR) system for pulmonary nodule databases (ie. LIDC).
    Downloads: 0 This Week
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  • 10
    The cancer Biomedical Informatics Grid being developed by the NCI is a virtual informatics infrastructure that connects data, research tools, and scientists. This project is developing extensions to MS Excel that allow users to access caBIG data-services.
    Downloads: 0 This Week
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  • 11
    OpenMedic is a set of open source software and hardware building blocks written in C# for building computer-based medical instrumentation and controls using the .NET framework.
    Downloads: 1 This Week
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  • 12
    FacScan is a predicting tool of transcription factor binding sites. FacScan scans multiple DNA sequences, e.g. from microarray experiments, for potential binding sites of regulatory transcription factors. Common sites shared by the genes will also b
    Downloads: 0 This Week
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