Showing 16 open source projects for "file::rsyncp"

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    SKUDONET Open Source Load Balancer

    Take advantage of Open Source Load Balancer to elevate your business security and IT infrastructure with a custom ADC Solution.

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  • 1

    CusVarDB

    CusVarDB generated variant protein database from NGS-datasets

    ... functions such as 1. Download the SRA 2. Convert the SRA file to fastq file format 3. Download the annotation (ANNOVAR) database and Dry-run concept to customize the commands Executables are available at http://bioinfo-tools.com/Downloads/CusVarDB/V1.0.0/ Test dataset is available at http://bioinfo-tools.com/Downloads/CusVarDB/V1.0.0/test_dataset.rar
    Downloads: 0 This Week
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  • 2
    YeastpRofile

    YeastpRofile

    Software to calculate profiles around TSS and TTS of yeast mRNAs

    ...). The input file must be a BedGraph formatted file based on yeast genome sequence release R64. The output file is a text tab-delimited table reporting R values for the various shifts of variable coordinates with respect to TSS or TTS. R related to each strand is also reported to verify that a similar profile is obtained in the two direction of transcription. 1) V. Pelechano, W. Wei, L.M. Steinmetz, Extensive transcriptional heterogeneity revealed by isoform profiling, Nature, 497 (2013) 127-13.
    Downloads: 0 This Week
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  • 3
    ShuffleFastaSeq

    ShuffleFastaSeq

    This application can be used to shuffle sequences in FASTA format.

    ShuffleFastaSeq is a Windows form application, written in C#, to shuffle FASTA-formatted sequences. The random permutation is obtained using a simple variation of the Fisher-Yates alghorithm implemented by Durstenfeld (https://en.wikipedia.org/wiki/Fisher%E2%80%93Yates_shuffle) ( Knuth DE. The art of computer programming: seminumerical algorithms. 3rd ed. Boston: Addison-Wesley; 1997). The input file contains one or more sequences in FASTA format. The number of shufflings (n) for each sequence...
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  • 4
    Morpheus search algorithm

    Morpheus search algorithm

    a mass spectrometry–based proteomics database search algorithm

    Morpheus is a mass spectrometry–based proteomics database search algorithm designed from the ground up for high-resolution tandem mass spectra. We have discovered that for high-resolution MS/MS, simple spectrum preprocessing and scoring performs superior to more complex algorithms originally developed for low-resolution MS/MS, such as Sequest, Mascot, and OMSSA. Morpheus is also very fast—up to nearly 5 times faster than OMSSA for large human datasets. It is written in C# and is available...
    Downloads: 0 This Week
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  • Translate docs, audio, and videos in real time with Google AI Icon
    Translate docs, audio, and videos in real time with Google AI

    Make your content and apps multilingual with fast, dynamic machine translation available in thousands of language pairs.

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  • 5

    CS Miner

    A tool for Navigating in Chemical Space

    CS-Miner stands for Chemical Space Miner and is a software tool for navigating in chemical space of compound databases. It helps for deriving appropriate classification models and performing virtual screening. Download it via: http://csminer.com/csm/?p=7 A quick tutorial is available through: http://csminer.com/csm/?p=8
    Downloads: 6 This Week
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  • 6

    GUDM

    A tool for pre-processing and fusing heterogeneous datasets

    Global Unified Data Modeler (GUDM) is a bioinformatics software tool used for pre-processing and integrating multiple heterogeneous datasets, collected from multi-modal sources, into an integrated dataset. This integrated dataset is supposed to be used for different types of medical analysis and unified decisions, using different machine learning approaches.
    Downloads: 0 This Week
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  • 7

    PeptideManager_LRNO

    Unique Peptide Sequence Finder (host background (xenografts) friendly)

    PeptideManager is aimed to help the pre-selection of unique peptide sequences for the design of targeted proteomics approaches. Its main advantage is to allow the presence of a host/background proteome (e.g., xenograft samples) during this peptide sequences selection. PeptideManager can build peptide sequences databases from various public repository (SwissProt/Trembl/UniProt, RefSeq, IPI) and various proteases. For any use, please refer to the publication: doi:...
    Downloads: 0 This Week
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  • 8
    openDICOM.NET - DICOM library, console tools, DICOM viewer/browser for Mono/.NET and Beagle Desktop Search Plugin. The project supports ACR-NEMA and DICOM file formats and provides transcoding to XML. It is written in C# and licensed under (L)GPL.
    Downloads: 6 This Week
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  • 9
    OpenVista (R)
    OpenVista(R) is the open-source version of VistA, an enterprise grade health care information system developed by the U.S. Veterans Affairs and deployed at 1,500 global facilities. OpenVista is a registered trademark of Medsphere Systems Corporation
    Downloads: 1 This Week
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  • 10
    BigBang/Horizon is a proteomics data analysis pipeline with focus on the shotgun LC/MSMS workflow.
    Downloads: 0 This Week
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  • 11
    STR miner(or SSRdigger) is a SSR searching software which supports both perfect and imperfect SSR search with specified length, match percentage and repeat threshold. With a GUI interface, fasta and MS excel format output, STR miner is user-friendly.
    Downloads: 3 This Week
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  • 12
    Ethovision Paste Track
    The goal of EPT is to get track representations from the clipboard (put there by Ethovision) and to automatically save the serie of images while incrementing a value in their filename.
    Downloads: 0 This Week
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  • 13
    Analyzes water molecules in the protein data bank file to look for polygonal water structures by looking for H-bond connections. GUI with automatic statistics, and PDB polygon drawer for viewing in Coot (Separate x-ray modelling software) included.
    Downloads: 0 This Week
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  • 14
    FacScan is a predicting tool of transcription factor binding sites. FacScan scans multiple DNA sequences, e.g. from microarray experiments, for potential binding sites of regulatory transcription factors. Common sites shared by the genes will also b
    Downloads: 0 This Week
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  • 15
    BioCSharp is an open-source project designed to provide a bioinformatics .NET framework for processing biological data. It will include objects for manipulating sequences, file parsers, DAS, database access and analysis and statistical routines.
    Downloads: 0 This Week
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  • 16

    Project3dKidneyPrinted

    To build a 3d Printer that uses tine micro-pipette of some micrometers

    To build a 3d Printer that uses tine micro-pipette of some micrometers of radio to print from a 3d scheme a functional kidney, using steam cells,in 6 months.
    Downloads: 0 This Week
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