Showing 2 open source projects for "memory console"

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    UniversalMer

    UniversalMer

    A CLI k-mer counting tool for multiple sizes of k at once.

    UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists.
    Downloads: 0 This Week
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    PASHA: Parallelized Short Read Assembly

    One of the fastest parallel short read assemblers for large genomes.

    PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates...
    Downloads: 3 This Week
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