Showing 4 open source projects for "linux programming"

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  • 1

    skewer

    A fast and sensitive adapter trimmer for illumina paired-end sequences

    This program implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences.
    Downloads: 8 This Week
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  • 2

    hrefinder

    Detection of homologous recombination events from SNP data

    This software detects homologous recombination events (HREs) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. We use information from the nearby SNPs, so that if 1-2 alleles in a series of...
    Downloads: 0 This Week
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  • 3
    The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network. Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!
    Downloads: 0 This Week
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  • 4
    Genetic programming environment to inference context free grammars base on positive and negative examples of language.
    Downloads: 0 This Week
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