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Manual counter with the keyboard or the mouse on images
The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location.
A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
Tools for mapping RNA-Seq reads to eukaryotic genomes
Tuque includes 4 programs:
tuqueIndex to prepare Bowtie indexes that include spliced sequences
tuqueMap to map reads using the prepared indices
tuqueSplice to find splice junctions from the reads
tuqueCount to count the reads mapping within annotated sequence intervals